Top 10 genes with highest correlation to Rv1880c/cyp140:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3059/cyp136 | (cc=0.7003) | info on Rv3059/cyp136 |
| Rv3354/- | (cc=0.6594) | info on Rv3354/- |
| Rv2499c/- | (cc=0.6544) | info on Rv2499c/- |
| Rv0089/- | (cc=0.6503) | info on Rv0089/- |
| Rv3295/- | (cc=0.6454) | info on Rv3295/- |
| Rv2007c/fdxA | (cc=0.6354) | info on Rv2007c/fdxA |
| Rv3058c/- | (cc=0.5992) | info on Rv3058c/- |
| Rv2633c/- | (cc=0.5949) | info on Rv2633c/- |
| Rv1999c/- | (cc=0.5923) | info on Rv1999c/- |
| Rv1974/- | (cc=0.5831) | info on Rv1974/- |
Correlation of Rv1880c/cyp140 with Rv1999c/-
Normalized LFCs for Rv1880c/cyp140:
(description and provenance of datasets)
| Rv1880c/cyp140 | Rv1999c/- | |
| Fe_supp_jason_reseq | -0.706 | 0.032 |
| low_pH_jason_reseq | -0.391 | -0.609 |
| NO_jason_reseq | 0.084 | 0.239 |
| B6_jason_reseq | -0.111 | -0.061 |
| MHCII_jason_reseq | 0.084 | 0.316 |
| Isoniazid02 | 0.866 | 0.188 |
| Rifampicin4 | -0.533 | 0.628 |
| Ethambutol3 | 0.652 | 0.17 |
| Meropenem3 | 0.491 | -0.29 |
| Vancomycin16 | -0.05 | 0.032 |
| Rv2680_day32 | 0.843 | 0.398 |
| H37Rv_KO_MarP | -0.464 | -0.042 |
| hypoxia_3wks | -0.319 | -0.227 |
| hypoxia_6wks | 0.0 | -0.397 |
| glycerol | -0.456 | -0.499 |
| cholesterol | 0.304 | -0.351 |
| AJ | -0.203 | -0.097 |
| Bibs02 | 0.634 | 0.007 |
| Bibs02c | -0.15 | -0.088 |
| BL6 | -0.613 | -0.925 |
| BL6a | -0.748 | -0.676 |
| BXD01 | -0.52 | -0.679 |
| BXD010 | -0.243 | -0.928 |
| BXD011 | -0.058 | -0.795 |
| BXD03 | -0.763 | -0.578 |
| BXD04 | -0.177 | -0.7 |
| BXD05 | -0.007 | -1.079 |
| BXD06 | -0.403 | -0.89 |
| BXD07 | -0.734 | -0.664 |
| BXD08 | -0.42 | -0.867 |
| BXD09 | -0.829 | -0.907 |
| CAST | 0.259 | -0.35 |
| CCcont | -0.744 | -0.974 |
| DS01 | -0.351 | 0.053 |
| DS02 | -0.614 | 0.118 |
| DS04 | -0.535 | 0.333 |
| DS0c | -0.121 | -0.515 |
| GP01 | -0.423 | 0.218 |
| GP02 | -0.115 | -0.615 |
| GP0c | -0.789 | -0.365 |
| NOD | 0.407 | -0.202 |
| NZO | 0.215 | -0.228 |
| PWK | 0.141 | -0.359 |
| H37Rv_KO_CtpC | -0.903 | -1.177 |
| H37Rv_KO_CtpD | -0.506 | -0.724 |
| H37Rv_KO_Rv1272 | 0.208 | -0.021 |
| H37Rv_KO_SugABC | -0.763 | -0.338 |
| H37Rv_KO_MbtN | -1.618 | -0.29 |
| Trans05 | -0.287 | -0.035 |
| macrophage_unactivated | -1.102 | -0.038 |
| IL1 | -0.255 | -0.522 |
| Rapamycin | -0.519 | -0.623 |
| Tcell | -0.28 | -0.238 |
| GMCSF | -0.021 | 0.356 |
| IFNab | -0.481 | -0.78 |
| IFNg | -0.684 | -0.505 |
| IFNg_GMCSF1 | -0.189 | 0.072 |
| Rv1432_day32 | -0.175 | 0.248 |
| Rv1565c_day32 | 0.663 | 0.122 |
| secA2_input | -0.454 | -0.374 |
| delta_Rv3594 | 0.124 | -0.021 |
| delta_Rv3717 | -0.41 | 0.216 |
| delta_Rv3811 | -0.012 | 0.326 |
| delta_Rv0954 | 0.032 | -0.335 |
| PonA1 | 0.057 | -0.308 |
| EccD1_KO | 0.582 | 0.296 |
| EspI_KO | 0.482 | -0.088 |
| PE35_KO | 0.63 | 0.63 |
| PPE68_KO | 0.464 | 0.31 |
| glycerol2 | 1.843 | 0.765 |
| lignocerate | 0.972 | 0.848 |
| oleate | 0.418 | 0.119 |
| phosphatidylcholine | 1.036 | 0.899 |
| acetate | 0.49 | 0.648 |
| glucAc | 0.36 | 0.925 |
| Rv0950ko | 0.709 | 0.199 |
| Rv1096ko | 0.241 | -0.13 |
| Rv3684ko | 0.196 | 0.445 |
| delta_otsA_trehalose | 1.179 | 0.475 |