Top 10 genes with highest correlation to Rv1866/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1676/- | (cc=0.5913) | info on Rv1676/- |
| Rv2962c/- | (cc=0.5811) | info on Rv2962c/- |
| Rv1763/- | (cc=0.5807) | info on Rv1763/- |
| Rv3345c/PE_PGRS50 | (cc=0.5242) | info on Rv3345c/PE_PGRS50 |
| Rv2648/- | (cc=0.5225) | info on Rv2648/- |
| Rv1004c/- | (cc=0.5183) | info on Rv1004c/- |
| Rv2312/- | (cc=0.5144) | info on Rv2312/- |
| Rv1543/- | (cc=0.5126) | info on Rv1543/- |
| Rv2841c/nusA | (cc=0.5079) | info on Rv2841c/nusA |
| Rv1913/- | (cc=0.5078) | info on Rv1913/- |
Correlation of Rv1866/- with Rv1676/-
Normalized LFCs for Rv1866/-:
(description and provenance of datasets)
| Rv1866/- | Rv1676/- | |
| Fe_supp_jason_reseq | 0.317 | -0.818 |
| low_pH_jason_reseq | -0.908 | 0.34 |
| NO_jason_reseq | -0.354 | 0.533 |
| B6_jason_reseq | -0.287 | -0.411 |
| MHCII_jason_reseq | 0.121 | 0.103 |
| Isoniazid02 | 0.591 | 0.268 |
| Rifampicin4 | 0.0 | 0.726 |
| Ethambutol3 | 0.652 | 0.039 |
| Meropenem3 | -0.247 | 0.803 |
| Vancomycin16 | -0.698 | 0.99 |
| Rv2680_day32 | 0.152 | -0.393 |
| H37Rv_KO_MarP | -0.154 | 1.507 |
| hypoxia_3wks | 0.805 | 0.0 |
| hypoxia_6wks | 0.564 | 0.808 |
| glycerol | -0.212 | 1.181 |
| cholesterol | 0.414 | -0.118 |
| AJ | 0.066 | 1.062 |
| Bibs02 | -0.685 | 0.138 |
| Bibs02c | 0.088 | 0.85 |
| BL6 | -0.723 | -0.138 |
| BL6a | 0.056 | 0.502 |
| BXD01 | -0.201 | -0.695 |
| BXD010 | 0.122 | -0.8 |
| BXD011 | 0.018 | -0.34 |
| BXD03 | -0.164 | -1.209 |
| BXD04 | -0.515 | -0.508 |
| BXD05 | -0.059 | -0.148 |
| BXD06 | 0.056 | -1.465 |
| BXD07 | -0.607 | -0.865 |
| BXD08 | -0.227 | -1.794 |
| BXD09 | -0.847 | -1.256 |
| CAST | 0.0 | 0.853 |
| CCcont | -0.9 | 0.285 |
| DS01 | 0.099 | 1.381 |
| DS02 | -0.063 | 2.105 |
| DS04 | 0.028 | 0.753 |
| DS0c | 0.525 | 1.425 |
| GP01 | 0.803 | -0.527 |
| GP02 | 0.357 | 0.603 |
| GP0c | 0.835 | 0.16 |
| NOD | 0.215 | -0.381 |
| NZO | 0.459 | 0.587 |
| PWK | 0.055 | -0.053 |
| H37Rv_KO_CtpC | 0.113 | 0.309 |
| H37Rv_KO_CtpD | 0.971 | 2.042 |
| H37Rv_KO_Rv1272 | 1.402 | 1.968 |
| H37Rv_KO_SugABC | 0.832 | 1.851 |
| H37Rv_KO_MbtN | 1.654 | 1.596 |
| Trans05 | 0.645 | 1.077 |
| macrophage_unactivated | -1.165 | -1.502 |
| IL1 | -1.771 | -2.966 |
| Rapamycin | -1.04 | -3.069 |
| Tcell | -1.01 | -2.704 |
| GMCSF | -1.138 | -2.64 |
| IFNab | -1.911 | -3.607 |
| IFNg | -1.502 | -3.188 |
| IFNg_GMCSF1 | -1.065 | -2.13 |
| Rv1432_day32 | 0.494 | 1.46 |
| Rv1565c_day32 | 0.0 | 0.36 |
| secA2_input | -0.291 | -0.568 |
| delta_Rv3594 | 0.332 | -0.396 |
| delta_Rv3717 | 0.459 | -0.615 |
| delta_Rv3811 | 0.079 | -1.981 |
| delta_Rv0954 | -0.12 | 0.194 |
| PonA1 | -0.507 | 0.386 |
| EccD1_KO | -1.105 | 1.168 |
| EspI_KO | -0.163 | 1.372 |
| PE35_KO | 0.265 | 1.607 |
| PPE68_KO | 0.118 | 1.302 |
| glycerol2 | 0.263 | 0.581 |
| lignocerate | -0.235 | 0.843 |
| oleate | 0.713 | -0.163 |
| phosphatidylcholine | 0.473 | 0.542 |
| acetate | -0.246 | 1.15 |
| glucAc | -0.877 | 1.052 |
| Rv0950ko | -0.971 | -1.33 |
| Rv1096ko | -1.043 | 0.075 |
| Rv3684ko | -0.062 | 0.0 |
| delta_otsA_trehalose | 0.325 | -0.232 |