Top 10 genes with highest correlation to Rv1860/apa:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2363/amiA2 | (cc=0.7675) | info on Rv2363/amiA2 |
| Rv1006/- | (cc=0.7287) | info on Rv1006/- |
| Rv0436c/pssA | (cc=0.6954) | info on Rv0436c/pssA |
| Rv2869c/rip | (cc=0.6913) | info on Rv2869c/rip |
| Rv3810/pirG | (cc=0.6837) | info on Rv3810/pirG |
| Rv1433/- | (cc=0.6706) | info on Rv1433/- |
| Rv0437c/psd | (cc=0.6598) | info on Rv0437c/psd |
| Rv2700/- | (cc=0.6542) | info on Rv2700/- |
| Rv3005c/- | (cc=0.6094) | info on Rv3005c/- |
| Rv0994/moeA1 | (cc=0.6086) | info on Rv0994/moeA1 |
Correlation of Rv1860/apa with Rv0437c/psd
Normalized LFCs for Rv1860/apa:
(description and provenance of datasets)
| Rv1860/apa | Rv0437c/psd | |
| Fe_supp_jason_reseq | 3.272 | 0.923 |
| low_pH_jason_reseq | -0.457 | 0.842 |
| NO_jason_reseq | 0.129 | -0.69 |
| B6_jason_reseq | 0.054 | -0.292 |
| MHCII_jason_reseq | -0.101 | -0.123 |
| Isoniazid02 | -1.043 | 1.106 |
| Rifampicin4 | -5.772 | -2.05 |
| Ethambutol3 | 0.061 | -1.327 |
| Meropenem3 | -0.701 | -2.165 |
| Vancomycin16 | -5.858 | -5.385 |
| Rv2680_day32 | 1.123 | -0.359 |
| H37Rv_KO_MarP | -3.981 | -1.926 |
| hypoxia_3wks | -1.958 | -0.885 |
| hypoxia_6wks | -3.197 | -1.013 |
| glycerol | 1.934 | 0.184 |
| cholesterol | 1.239 | 1.049 |
| AJ | -0.541 | 0.0 |
| Bibs02 | 0.898 | 0.0 |
| Bibs02c | 0.838 | 1.613 |
| BL6 | -0.822 | 0.0 |
| BL6a | -0.55 | 0.346 |
| BXD01 | -1.087 | -0.13 |
| BXD010 | -1.021 | -0.128 |
| BXD011 | -0.643 | 0.222 |
| BXD03 | -0.934 | -0.135 |
| BXD04 | -1.131 | -0.124 |
| BXD05 | -0.123 | -0.135 |
| BXD06 | -1.014 | -0.133 |
| BXD07 | -1.156 | -0.138 |
| BXD08 | -0.564 | -0.133 |
| BXD09 | -0.75 | -0.14 |
| CAST | -1.59 | -0.23 |
| CCcont | 1.056 | 2.54 |
| DS01 | 0.801 | 0.926 |
| DS02 | 0.737 | -0.217 |
| DS04 | 1.248 | 0.177 |
| DS0c | -0.652 | 0.0 |
| GP01 | -0.682 | 0.172 |
| GP02 | -1.0 | -0.083 |
| GP0c | -1.085 | 0.0 |
| NOD | -1.01 | -0.225 |
| NZO | 0.626 | -0.199 |
| PWK | -0.544 | -0.196 |
| H37Rv_KO_CtpC | 1.966 | 2.059 |
| H37Rv_KO_CtpD | -0.751 | 0.221 |
| H37Rv_KO_Rv1272 | 0.141 | 0.457 |
| H37Rv_KO_SugABC | 1.422 | 0.0 |
| H37Rv_KO_MbtN | 0.349 | 0.927 |
| Trans05 | 1.414 | -0.131 |
| macrophage_unactivated | 0.609 | -0.363 |
| IL1 | -0.78 | -0.715 |
| Rapamycin | -0.328 | 1.188 |
| Tcell | -0.857 | -1.235 |
| GMCSF | 0.09 | 0.283 |
| IFNab | -0.553 | 0.323 |
| IFNg | -0.286 | -1.013 |
| IFNg_GMCSF1 | -0.22 | -1.191 |
| Rv1432_day32 | 1.0 | -0.884 |
| Rv1565c_day32 | 0.351 | 0.924 |
| secA2_input | 1.19 | 0.371 |
| delta_Rv3594 | 1.386 | 0.506 |
| delta_Rv3717 | 0.839 | -1.723 |
| delta_Rv3811 | 1.423 | 0.134 |
| delta_Rv0954 | 2.022 | 1.647 |
| PonA1 | 0.397 | 0.829 |
| EccD1_KO | 0.918 | 0.855 |
| EspI_KO | 1.189 | 0.79 |
| PE35_KO | 1.021 | 1.482 |
| PPE68_KO | 1.315 | 1.245 |
| glycerol2 | -0.563 | 0.0 |
| lignocerate | -0.521 | 0.0 |
| oleate | -0.173 | 0.0 |
| phosphatidylcholine | -1.097 | 0.0 |
| acetate | 0.648 | 0.0 |
| glucAc | 0.153 | 0.0 |
| Rv0950ko | -1.049 | -0.899 |
| Rv1096ko | -0.98 | 0.546 |
| Rv3684ko | 0.138 | 0.062 |
| delta_otsA_trehalose | -0.86 | 0.04 |