TnSeqCorr

Top 10 genes with highest correlation to Rv1817/-:

update plotcorrelationlink to info on gene
Rv2113/- (cc=0.8479) info on Rv2113/-
Rv0453/PPE11 (cc=0.8091) info on Rv0453/PPE11
Rv2848c/cobB (cc=0.7965) info on Rv2848c/cobB
Rv2822c/- (cc=0.7829) info on Rv2822c/-
Rv0159c/PE3 (cc=0.7688) info on Rv0159c/PE3
Rv3815c/- (cc=0.7673) info on Rv3815c/-
Rv3862c/whiB6 (cc=0.5436) info on Rv3862c/whiB6
Rv2339/mmpL9 (cc=0.5212) info on Rv2339/mmpL9
Rv3685c/cyp137 (cc=0.5029) info on Rv3685c/cyp137
Rv2389c/rpfD (cc=0.5017) info on Rv2389c/rpfD

Correlation of Rv1817/- with Rv2339/mmpL9

Normalized LFCs for Rv1817/-:
(description and provenance of datasets)
Rv1817/-Rv2339/mmpL9
Fe_supp_jason_reseq

-0.223

0.283

low_pH_jason_reseq

-0.388

-0.164

NO_jason_reseq

-0.714

-0.349

B6_jason_reseq

-0.232

-0.289

MHCII_jason_reseq

0.326

0.481

Isoniazid02

0.215

0.375

Rifampicin4

0.0

0.0

Ethambutol3

0.612

0.568

Meropenem3

0.316

-0.052

Vancomycin16

-0.04

0.146

Rv2680_day32

-0.437

0.365

H37Rv_KO_MarP

-0.186

0.047

hypoxia_3wks

0.116

0.267

hypoxia_6wks

-0.203

-0.177

glycerol

0.604

-0.426

cholesterol

0.241

-0.305

AJ

-0.311

0.247

Bibs02

0.738

-0.127

Bibs02c

0.358

-0.276

BL6

-0.327

0.196

BL6a

-0.133

0.211

BXD01

0.177

0.253

BXD010

-0.209

0.557

BXD011

0.092

0.394

BXD03

-0.113

0.36

BXD04

-0.103

0.565

BXD05

-0.219

0.615

BXD06

0.007

0.413

BXD07

-0.344

0.295

BXD08

0.091

0.087

BXD09

-0.331

0.41

CAST

0.22

0.404

CCcont

-0.371

-0.197

DS01

0.453

0.154

DS02

0.334

-0.126

DS04

0.332

0.6

DS0c

0.409

0.578

GP01

-0.077

0.591

GP02

0.301

0.138

GP0c

-0.088

0.057

NOD

0.441

1.289

NZO

0.069

0.35

PWK

0.068

0.47

H37Rv_KO_CtpC

0.111

0.488

H37Rv_KO_CtpD

0.178

0.668

H37Rv_KO_Rv1272

1.0

1.099

H37Rv_KO_SugABC

-0.144

0.751

H37Rv_KO_MbtN

0.43

0.571

Trans05

1.011

1.072

macrophage_unactivated

1.588

0.42

IL1

2.201

0.611

Rapamycin

2.317

0.724

Tcell

-4.923

-0.648

GMCSF

2.26

1.225

IFNab

1.886

0.801

IFNg

2.397

1.056

IFNg_GMCSF1

2.385

0.55

Rv1432_day32

0.096

0.576

Rv1565c_day32

-0.156

0.3

secA2_input

-0.434

-0.631

delta_Rv3594

0.0

-0.072

delta_Rv3717

-0.028

0.0

delta_Rv3811

0.28

0.046

delta_Rv0954

0.142

0.079

PonA1

-0.059

-0.293

EccD1_KO

0.687

-0.046

EspI_KO

0.359

-0.168

PE35_KO

0.63

0.166

PPE68_KO

0.56

0.355

glycerol2

0.085

0.0

lignocerate

-0.069

0.339

oleate

0.386

0.081

phosphatidylcholine

0.239

0.231

acetate

-0.156

-0.048

glucAc

-0.167

-0.227

Rv0950ko

0.13

0.121

Rv1096ko

-0.392

-1.095

Rv3684ko

-0.102

-0.223

delta_otsA_trehalose

-0.085

-0.557