Top 10 genes with highest correlation to Rv1817/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2113/- | (cc=0.8479) | info on Rv2113/- |
| Rv0453/PPE11 | (cc=0.8091) | info on Rv0453/PPE11 |
| Rv2848c/cobB | (cc=0.7965) | info on Rv2848c/cobB |
| Rv2822c/- | (cc=0.7829) | info on Rv2822c/- |
| Rv0159c/PE3 | (cc=0.7688) | info on Rv0159c/PE3 |
| Rv3815c/- | (cc=0.7673) | info on Rv3815c/- |
| Rv3862c/whiB6 | (cc=0.5436) | info on Rv3862c/whiB6 |
| Rv2339/mmpL9 | (cc=0.5212) | info on Rv2339/mmpL9 |
| Rv3685c/cyp137 | (cc=0.5029) | info on Rv3685c/cyp137 |
| Rv2389c/rpfD | (cc=0.5017) | info on Rv2389c/rpfD |
Correlation of Rv1817/- with Rv0453/PPE11
Normalized LFCs for Rv1817/-:
(description and provenance of datasets)
| Rv1817/- | Rv0453/PPE11 | |
| Fe_supp_jason_reseq | -0.223 | 0.316 |
| low_pH_jason_reseq | -0.388 | -1.062 |
| NO_jason_reseq | -0.714 | -0.339 |
| B6_jason_reseq | -0.232 | 0.514 |
| MHCII_jason_reseq | 0.326 | 0.068 |
| Isoniazid02 | 0.215 | 0.535 |
| Rifampicin4 | 0.0 | -0.119 |
| Ethambutol3 | 0.612 | 0.539 |
| Meropenem3 | 0.316 | 0.121 |
| Vancomycin16 | -0.04 | 0.0 |
| Rv2680_day32 | -0.437 | -0.072 |
| H37Rv_KO_MarP | -0.186 | 0.315 |
| hypoxia_3wks | 0.116 | 0.144 |
| hypoxia_6wks | -0.203 | -0.265 |
| glycerol | 0.604 | -0.607 |
| cholesterol | 0.241 | -0.039 |
| AJ | -0.311 | -0.116 |
| Bibs02 | 0.738 | 0.087 |
| Bibs02c | 0.358 | 0.294 |
| BL6 | -0.327 | -0.962 |
| BL6a | -0.133 | 0.136 |
| BXD01 | 0.177 | -0.407 |
| BXD010 | -0.209 | -0.788 |
| BXD011 | 0.092 | -0.361 |
| BXD03 | -0.113 | 0.029 |
| BXD04 | -0.103 | -0.016 |
| BXD05 | -0.219 | -0.628 |
| BXD06 | 0.007 | -0.604 |
| BXD07 | -0.344 | -0.527 |
| BXD08 | 0.091 | -0.251 |
| BXD09 | -0.331 | -0.473 |
| CAST | 0.22 | 0.342 |
| CCcont | -0.371 | -1.136 |
| DS01 | 0.453 | 0.313 |
| DS02 | 0.334 | 0.605 |
| DS04 | 0.332 | 0.474 |
| DS0c | 0.409 | 0.167 |
| GP01 | -0.077 | -0.338 |
| GP02 | 0.301 | -0.053 |
| GP0c | -0.088 | -0.953 |
| NOD | 0.441 | -0.185 |
| NZO | 0.069 | -0.314 |
| PWK | 0.068 | 0.222 |
| H37Rv_KO_CtpC | 0.111 | -0.518 |
| H37Rv_KO_CtpD | 0.178 | -0.069 |
| H37Rv_KO_Rv1272 | 1.0 | 0.359 |
| H37Rv_KO_SugABC | -0.144 | 0.188 |
| H37Rv_KO_MbtN | 0.43 | 0.237 |
| Trans05 | 1.011 | 0.372 |
| macrophage_unactivated | 1.588 | 0.338 |
| IL1 | 2.201 | 1.106 |
| Rapamycin | 2.317 | 1.28 |
| Tcell | -4.923 | -3.421 |
| GMCSF | 2.26 | 1.708 |
| IFNab | 1.886 | 0.716 |
| IFNg | 2.397 | 1.799 |
| IFNg_GMCSF1 | 2.385 | 1.31 |
| Rv1432_day32 | 0.096 | -0.185 |
| Rv1565c_day32 | -0.156 | -0.169 |
| secA2_input | -0.434 | -0.319 |
| delta_Rv3594 | 0.0 | -0.15 |
| delta_Rv3717 | -0.028 | -0.458 |
| delta_Rv3811 | 0.28 | -0.574 |
| delta_Rv0954 | 0.142 | -0.707 |
| PonA1 | -0.059 | -0.613 |
| EccD1_KO | 0.687 | -0.257 |
| EspI_KO | 0.359 | -0.722 |
| PE35_KO | 0.63 | -0.688 |
| PPE68_KO | 0.56 | -0.614 |
| glycerol2 | 0.085 | 0.363 |
| lignocerate | -0.069 | -0.062 |
| oleate | 0.386 | 0.635 |
| phosphatidylcholine | 0.239 | 0.38 |
| acetate | -0.156 | -0.527 |
| glucAc | -0.167 | -0.797 |
| Rv0950ko | 0.13 | 0.302 |
| Rv1096ko | -0.392 | -0.431 |
| Rv3684ko | -0.102 | 0.259 |
| delta_otsA_trehalose | -0.085 | -0.974 |