TnSeqCorr

Top 10 genes with highest correlation to Rv1796/mycP5:

update plotcorrelationlink to info on gene
Rv1795/eccD5 (cc=0.9758) info on Rv1795/eccD5
Rv1794/- (cc=0.9361) info on Rv1794/-
Rv1782/eccB5 (cc=0.9281) info on Rv1782/eccB5
Rv1783/eccC5 (cc=0.9086) info on Rv1783/eccC5
Rv1797/eccE5 (cc=0.8793) info on Rv1797/eccE5
Rv3399/- (cc=0.4227) info on Rv3399/-
Rv1063c/- (cc=0.4221) info on Rv1063c/-
Rv2065/cobH (cc=0.4104) info on Rv2065/cobH
Rv1267c/embR (cc=0.4029) info on Rv1267c/embR
Rv1781c/malQ (cc=0.3958) info on Rv1781c/malQ

Correlation of Rv1796/mycP5 with Rv1795/eccD5

Normalized LFCs for Rv1796/mycP5:
(description and provenance of datasets)
Rv1796/mycP5Rv1795/eccD5
Fe_supp_jason_reseq

1.07

0.415

low_pH_jason_reseq

0.0

0.0

NO_jason_reseq

0.0

0.0

B6_jason_reseq

0.0

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

0.0

0.0

Rifampicin4

-0.341

0.0

Ethambutol3

-0.153

0.0

Meropenem3

0.701

0.0

Vancomycin16

0.0

0.0

Rv2680_day32

0.0

0.0

H37Rv_KO_MarP

3.913

5.012

hypoxia_3wks

0.0

0.0

hypoxia_6wks

0.0

0.0

glycerol

2.817

4.046

cholesterol

1.261

1.325

AJ

0.0

0.0

Bibs02

0.0

0.0

Bibs02c

0.887

1.028

BL6

0.0

0.0

BL6a

0.198

0.377

BXD01

0.0

0.0

BXD010

0.0

0.0

BXD011

0.0

0.0

BXD03

0.0

0.0

BXD04

0.0

0.0

BXD05

0.0

0.0

BXD06

0.0

0.0

BXD07

0.0

0.0

BXD08

0.0

0.0

BXD09

0.0

0.0

CAST

0.0

0.23

CCcont

0.285

0.149

DS01

0.0

0.0

DS02

0.0

0.0

DS04

0.0

0.0

DS0c

0.0

0.0

GP01

4.286

4.073

GP02

3.666

4.279

GP0c

4.971

5.395

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.0

0.0

H37Rv_KO_CtpD

0.0

0.0

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.0

0.0

H37Rv_KO_MbtN

0.0

0.0

Trans05

0.0

0.0

macrophage_unactivated

0.0

0.0

IL1

0.0

0.0

Rapamycin

0.0

0.0

Tcell

0.0

0.0

GMCSF

0.0

0.0

IFNab

0.0

0.0

IFNg

0.0

0.0

IFNg_GMCSF1

0.0

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.0

0.0

secA2_input

0.216

0.216

delta_Rv3594

-0.211

0.0

delta_Rv3717

0.992

0.853

delta_Rv3811

-0.205

0.0

delta_Rv0954

2.103

2.536

PonA1

-0.159

0.0

EccD1_KO

-0.454

0.0

EspI_KO

-0.394

0.0

PE35_KO

0.368

0.767

PPE68_KO

0.0

0.442

glycerol2

0.0

0.0

lignocerate

0.0

0.0

oleate

0.0

0.0

phosphatidylcholine

0.0

0.0

acetate

0.437

0.0

glucAc

0.0

0.0

Rv0950ko

0.669

0.38

Rv1096ko

0.0

0.38

Rv3684ko

-0.413

0.0

delta_otsA_trehalose

0.133

0.0