TnSeqCorr

Top 10 genes with highest correlation to Rv1760/-:

update plotcorrelationlink to info on gene
Rv2351c/plcA (cc=0.5895) info on Rv2351c/plcA
Rv2025c/- (cc=0.5707) info on Rv2025c/-
Rv3784/- (cc=0.5178) info on Rv3784/-
Rv1527c/pks5 (cc=0.4985) info on Rv1527c/pks5
Rv3294c/- (cc=0.4861) info on Rv3294c/-
Rv0336/- (cc=0.4703) info on Rv0336/-
Rv1618/tesB1 (cc=0.4698) info on Rv1618/tesB1
Rv3367/PE_PGRS51 (cc=0.459) info on Rv3367/PE_PGRS51
Rv2443/dctA (cc=0.4576) info on Rv2443/dctA
Rv1425/- (cc=0.4574) info on Rv1425/-

Correlation of Rv1760/- with Rv1425/-

Normalized LFCs for Rv1760/-:
(description and provenance of datasets)
Rv1760/-Rv1425/-
Fe_supp_jason_reseq

0.36

0.054

low_pH_jason_reseq

-1.173

-0.119

NO_jason_reseq

0.333

-0.168

B6_jason_reseq

0.16

0.634

MHCII_jason_reseq

0.248

0.73

Isoniazid02

0.278

1.234

Rifampicin4

0.016

-0.087

Ethambutol3

0.28

0.061

Meropenem3

1.035

0.817

Vancomycin16

0.119

0.085

Rv2680_day32

-0.408

0.043

H37Rv_KO_MarP

-0.141

0.236

hypoxia_3wks

-0.064

-0.263

hypoxia_6wks

0.098

-0.56

glycerol

0.176

-0.591

cholesterol

0.434

0.012

AJ

0.745

0.123

Bibs02

0.065

-0.11

Bibs02c

-0.07

-0.27

BL6

0.0

-0.246

BL6a

-0.195

-0.775

BXD01

0.028

0.297

BXD010

-0.168

-0.432

BXD011

0.041

-0.176

BXD03

-0.245

-0.488

BXD04

0.044

0.021

BXD05

-0.117

-0.328

BXD06

-0.196

0.039

BXD07

-0.306

-0.152

BXD08

0.298

0.163

BXD09

-0.189

-0.395

CAST

0.405

-0.489

CCcont

-0.106

-0.25

DS01

0.252

0.05

DS02

0.153

0.46

DS04

-0.056

0.416

DS0c

0.159

0.09

GP01

0.953

-0.038

GP02

1.058

1.025

GP0c

0.478

-0.199

NOD

0.849

0.163

NZO

0.63

0.295

PWK

0.529

0.276

H37Rv_KO_CtpC

0.162

-0.328

H37Rv_KO_CtpD

0.262

0.169

H37Rv_KO_Rv1272

0.751

0.747

H37Rv_KO_SugABC

-0.21

-0.2

H37Rv_KO_MbtN

0.494

-0.224

Trans05

0.36

0.532

macrophage_unactivated

0.271

-0.107

IL1

-0.347

-0.05

Rapamycin

-0.457

0.276

Tcell

-0.339

-0.14

GMCSF

-0.032

0.045

IFNab

-0.472

-0.348

IFNg

0.0

-0.233

IFNg_GMCSF1

0.83

-0.135

Rv1432_day32

0.082

0.0

Rv1565c_day32

-0.125

0.377

secA2_input

-0.18

-0.027

delta_Rv3594

-0.067

-0.119

delta_Rv3717

0.006

-0.395

delta_Rv3811

0.071

-0.412

delta_Rv0954

0.317

0.58

PonA1

0.15

-0.488

EccD1_KO

-0.622

-0.526

EspI_KO

-0.716

-0.753

PE35_KO

-0.365

-0.312

PPE68_KO

-0.301

-1.008

glycerol2

0.391

0.996

lignocerate

0.592

1.223

oleate

0.285

0.896

phosphatidylcholine

0.609

1.389

acetate

-0.101

0.68

glucAc

0.213

0.474

Rv0950ko

0.467

-0.277

Rv1096ko

-0.106

-0.229

Rv3684ko

0.151

-0.098

delta_otsA_trehalose

0.432

-0.628