Top 10 genes with highest correlation to Rv1742/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0621/- | (cc=0.5183) | info on Rv0621/- |
| Rv1028c/kdpD | (cc=0.5055) | info on Rv1028c/kdpD |
| Rv3392c/cmaA1 | (cc=0.4832) | info on Rv3392c/cmaA1 |
| Rv2787/- | (cc=0.478) | info on Rv2787/- |
| Rv3439c/- | (cc=0.4747) | info on Rv3439c/- |
| Rv1291c/- | (cc=0.4655) | info on Rv1291c/- |
| Rv3093c/- | (cc=0.4641) | info on Rv3093c/- |
| Rv3078/hab | (cc=0.4607) | info on Rv3078/hab |
| Rv3362c/- | (cc=0.4593) | info on Rv3362c/- |
| Rv0724A/- | (cc=0.454) | info on Rv0724A/- |
Correlation of Rv1742/- with Rv2787/-
Normalized LFCs for Rv1742/-:
(description and provenance of datasets)
| Rv1742/- | Rv2787/- | |
| Fe_supp_jason_reseq | 0.098 | -0.892 |
| low_pH_jason_reseq | -0.304 | -0.196 |
| NO_jason_reseq | -0.221 | 0.144 |
| B6_jason_reseq | 0.241 | -0.077 |
| MHCII_jason_reseq | 0.727 | -0.3 |
| Isoniazid02 | -0.065 | -0.741 |
| Rifampicin4 | -0.533 | -0.309 |
| Ethambutol3 | -0.313 | -0.112 |
| Meropenem3 | 0.482 | 0.406 |
| Vancomycin16 | -0.326 | -0.52 |
| Rv2680_day32 | -0.393 | -0.755 |
| H37Rv_KO_MarP | 0.164 | 0.351 |
| hypoxia_3wks | -0.478 | -0.379 |
| hypoxia_6wks | -0.29 | 0.058 |
| glycerol | 0.047 | 0.079 |
| cholesterol | 0.179 | 2.446 |
| AJ | 0.536 | 0.16 |
| Bibs02 | -0.993 | -0.408 |
| Bibs02c | -0.061 | -0.029 |
| BL6 | -0.225 | -0.358 |
| BL6a | 0.092 | 0.069 |
| BXD01 | -0.76 | -0.214 |
| BXD010 | -0.187 | -0.211 |
| BXD011 | -0.478 | -0.305 |
| BXD03 | -0.14 | 0.233 |
| BXD04 | -0.222 | 0.005 |
| BXD05 | -0.133 | 0.053 |
| BXD06 | -0.466 | -0.132 |
| BXD07 | -0.657 | -0.156 |
| BXD08 | -0.573 | -0.444 |
| BXD09 | -0.213 | -0.306 |
| CAST | -0.3 | 0.501 |
| CCcont | -0.541 | -0.427 |
| DS01 | -0.659 | -0.098 |
| DS02 | 0.12 | -0.079 |
| DS04 | 0.29 | 0.503 |
| DS0c | -0.115 | -0.402 |
| GP01 | -1.148 | -0.324 |
| GP02 | 0.078 | 0.386 |
| GP0c | -0.802 | 0.551 |
| NOD | 0.683 | 1.217 |
| NZO | -0.461 | 0.053 |
| PWK | 0.081 | 0.315 |
| H37Rv_KO_CtpC | -0.599 | -0.184 |
| H37Rv_KO_CtpD | 0.956 | 0.57 |
| H37Rv_KO_Rv1272 | 0.384 | 0.006 |
| H37Rv_KO_SugABC | -0.212 | 0.136 |
| H37Rv_KO_MbtN | -0.281 | -0.538 |
| Trans05 | 0.054 | 0.096 |
| macrophage_unactivated | -0.669 | 0.088 |
| IL1 | 0.427 | -0.4 |
| Rapamycin | 0.184 | -0.414 |
| Tcell | -0.414 | -0.023 |
| GMCSF | 0.251 | -0.193 |
| IFNab | -0.094 | -0.336 |
| IFNg | 0.294 | -0.155 |
| IFNg_GMCSF1 | 0.324 | 0.324 |
| Rv1432_day32 | 0.407 | 0.364 |
| Rv1565c_day32 | 0.036 | -0.554 |
| secA2_input | 0.667 | -0.286 |
| delta_Rv3594 | 0.488 | 1.453 |
| delta_Rv3717 | 0.72 | 1.217 |
| delta_Rv3811 | 1.28 | 1.1 |
| delta_Rv0954 | 0.872 | 0.982 |
| PonA1 | 0.268 | 0.974 |
| EccD1_KO | -0.296 | 0.148 |
| EspI_KO | 0.764 | 0.69 |
| PE35_KO | -0.128 | 0.23 |
| PPE68_KO | 0.24 | 0.31 |
| glycerol2 | -0.343 | 0.723 |
| lignocerate | 0.189 | 0.505 |
| oleate | -0.03 | 0.759 |
| phosphatidylcholine | -0.014 | 0.888 |
| acetate | -0.233 | 0.497 |
| glucAc | -0.145 | 0.509 |
| Rv0950ko | 0.645 | 0.154 |
| Rv1096ko | -0.112 | -0.28 |
| Rv3684ko | 0.193 | 0.144 |
| delta_otsA_trehalose | 0.789 | 2.807 |