Top 10 genes with highest correlation to Rv1712/cmk:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3024c/trmU | (cc=0.6522) | info on Rv3024c/trmU |
| Rv3419c/gcp | (cc=0.5886) | info on Rv3419c/gcp |
| Rv0668/rpoC | (cc=0.5782) | info on Rv0668/rpoC |
| Rv1100/- | (cc=0.57) | info on Rv1100/- |
| Rv3218/- | (cc=0.5685) | info on Rv3218/- |
| Rv1239c/corA | (cc=0.5589) | info on Rv1239c/corA |
| Rv2793c/truB | (cc=0.5527) | info on Rv2793c/truB |
| Rv2842c/- | (cc=0.5493) | info on Rv2842c/- |
| Rv2655c/- | (cc=0.5487) | info on Rv2655c/- |
| Rv2569c/- | (cc=0.5479) | info on Rv2569c/- |
Correlation of Rv1712/cmk with Rv3024c/trmU
Normalized LFCs for Rv1712/cmk:
(description and provenance of datasets)
| Rv1712/cmk | Rv3024c/trmU | |
| Fe_supp_jason_reseq | -0.458 | 1.61 |
| low_pH_jason_reseq | 3.63 | -0.211 |
| NO_jason_reseq | 2.625 | 3.071 |
| B6_jason_reseq | -1.263 | 0.209 |
| MHCII_jason_reseq | -0.977 | -1.671 |
| Isoniazid02 | -0.183 | 0.0 |
| Rifampicin4 | 0.0 | 0.0 |
| Ethambutol3 | 0.0 | 0.0 |
| Meropenem3 | 0.386 | 0.0 |
| Vancomycin16 | 0.0 | 0.0 |
| Rv2680_day32 | 1.501 | -0.161 |
| H37Rv_KO_MarP | -1.081 | -1.197 |
| hypoxia_3wks | -1.388 | -1.782 |
| hypoxia_6wks | -1.013 | -1.222 |
| glycerol | 0.0 | 0.0 |
| cholesterol | 0.0 | 0.0 |
| AJ | 0.0 | 0.0 |
| Bibs02 | 0.0 | 0.0 |
| Bibs02c | 0.0 | 0.0 |
| BL6 | 0.125 | 1.346 |
| BL6a | 1.217 | 1.633 |
| BXD01 | 1.953 | 2.369 |
| BXD010 | 0.352 | 1.227 |
| BXD011 | 1.322 | 2.293 |
| BXD03 | 3.024 | 1.849 |
| BXD04 | 1.42 | 3.721 |
| BXD05 | 2.566 | 2.084 |
| BXD06 | 3.239 | 2.098 |
| BXD07 | 1.073 | 1.541 |
| BXD08 | 1.891 | 2.027 |
| BXD09 | 1.798 | 1.286 |
| CAST | 0.0 | 0.23 |
| CCcont | 0.733 | 1.606 |
| DS01 | 0.0 | 0.0 |
| DS02 | 0.0 | 0.0 |
| DS04 | 0.0 | 0.822 |
| DS0c | 0.0 | 0.0 |
| GP01 | 0.0 | 0.0 |
| GP02 | 0.0 | 0.0 |
| GP0c | 0.0 | 0.721 |
| NOD | 0.0 | 0.0 |
| NZO | 0.0 | 0.0 |
| PWK | 0.0 | 0.196 |
| H37Rv_KO_CtpC | 0.162 | 1.808 |
| H37Rv_KO_CtpD | 0.127 | 1.409 |
| H37Rv_KO_Rv1272 | 0.598 | 0.387 |
| H37Rv_KO_SugABC | 0.0 | 0.272 |
| H37Rv_KO_MbtN | 1.286 | 2.842 |
| Trans05 | 1.077 | 0.249 |
| macrophage_unactivated | -1.626 | -1.531 |
| IL1 | -0.955 | -1.163 |
| Rapamycin | 0.0 | -1.795 |
| Tcell | -0.495 | -0.228 |
| GMCSF | 1.001 | -2.131 |
| IFNab | 0.212 | 0.0 |
| IFNg | -1.376 | -1.849 |
| IFNg_GMCSF1 | 0.826 | -1.524 |
| Rv1432_day32 | 0.0 | -2.351 |
| Rv1565c_day32 | -0.766 | -0.599 |
| secA2_input | 1.86 | 1.993 |
| delta_Rv3594 | 0.268 | 0.659 |
| delta_Rv3717 | 0.677 | 3.088 |
| delta_Rv3811 | -0.07 | 1.24 |
| delta_Rv0954 | -2.109 | -2.089 |
| PonA1 | -1.324 | -1.657 |
| EccD1_KO | 0.0 | 1.194 |
| EspI_KO | -1.668 | -2.102 |
| PE35_KO | -0.239 | -3.039 |
| PPE68_KO | 0.0 | -2.582 |
| glycerol2 | -1.188 | -2.163 |
| lignocerate | -1.425 | -2.034 |
| oleate | -0.614 | -2.562 |
| phosphatidylcholine | -1.639 | -2.162 |
| acetate | -0.603 | -0.904 |
| glucAc | -0.78 | -0.991 |
| Rv0950ko | -0.793 | 1.366 |
| Rv1096ko | 2.223 | 2.657 |
| Rv3684ko | 0.255 | 2.607 |
| delta_otsA_trehalose | 0.366 | 2.212 |