Top 10 genes with highest correlation to Rv1712/cmk:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3024c/trmU | (cc=0.6522) | info on Rv3024c/trmU |
| Rv3419c/gcp | (cc=0.5886) | info on Rv3419c/gcp |
| Rv0668/rpoC | (cc=0.5782) | info on Rv0668/rpoC |
| Rv1100/- | (cc=0.57) | info on Rv1100/- |
| Rv3218/- | (cc=0.5685) | info on Rv3218/- |
| Rv1239c/corA | (cc=0.5589) | info on Rv1239c/corA |
| Rv2793c/truB | (cc=0.5527) | info on Rv2793c/truB |
| Rv2842c/- | (cc=0.5493) | info on Rv2842c/- |
| Rv2655c/- | (cc=0.5487) | info on Rv2655c/- |
| Rv2569c/- | (cc=0.5479) | info on Rv2569c/- |
Correlation of Rv1712/cmk with Rv0668/rpoC
Normalized LFCs for Rv1712/cmk:
(description and provenance of datasets)
| Rv1712/cmk | Rv0668/rpoC | |
| Fe_supp_jason_reseq | -0.458 | 0.319 |
| low_pH_jason_reseq | 3.63 | 2.259 |
| NO_jason_reseq | 2.625 | 2.809 |
| B6_jason_reseq | -1.263 | 1.836 |
| MHCII_jason_reseq | -0.977 | -0.149 |
| Isoniazid02 | -0.183 | -0.108 |
| Rifampicin4 | 0.0 | 1.172 |
| Ethambutol3 | 0.0 | -0.626 |
| Meropenem3 | 0.386 | -0.182 |
| Vancomycin16 | 0.0 | -0.196 |
| Rv2680_day32 | 1.501 | 0.0 |
| H37Rv_KO_MarP | -1.081 | 0.203 |
| hypoxia_3wks | -1.388 | -1.934 |
| hypoxia_6wks | -1.013 | 1.293 |
| glycerol | 0.0 | 0.12 |
| cholesterol | 0.0 | 0.0 |
| AJ | 0.0 | 0.934 |
| Bibs02 | 0.0 | -0.371 |
| Bibs02c | 0.0 | 0.124 |
| BL6 | 0.125 | 1.017 |
| BL6a | 1.217 | 1.175 |
| BXD01 | 1.953 | 2.02 |
| BXD010 | 0.352 | 1.496 |
| BXD011 | 1.322 | 2.698 |
| BXD03 | 3.024 | 1.173 |
| BXD04 | 1.42 | 2.865 |
| BXD05 | 2.566 | 2.213 |
| BXD06 | 3.239 | 1.994 |
| BXD07 | 1.073 | 1.825 |
| BXD08 | 1.891 | 2.118 |
| BXD09 | 1.798 | 0.974 |
| CAST | 0.0 | 1.023 |
| CCcont | 0.733 | 0.663 |
| DS01 | 0.0 | 0.522 |
| DS02 | 0.0 | 0.129 |
| DS04 | 0.0 | 0.523 |
| DS0c | 0.0 | -0.137 |
| GP01 | 0.0 | -0.277 |
| GP02 | 0.0 | -0.303 |
| GP0c | 0.0 | 0.577 |
| NOD | 0.0 | -0.142 |
| NZO | 0.0 | 0.886 |
| PWK | 0.0 | 1.537 |
| H37Rv_KO_CtpC | 0.162 | -0.455 |
| H37Rv_KO_CtpD | 0.127 | 0.51 |
| H37Rv_KO_Rv1272 | 0.598 | 0.239 |
| H37Rv_KO_SugABC | 0.0 | 1.074 |
| H37Rv_KO_MbtN | 1.286 | 1.0 |
| Trans05 | 1.077 | 1.024 |
| macrophage_unactivated | -1.626 | -0.581 |
| IL1 | -0.955 | -1.406 |
| Rapamycin | 0.0 | -0.368 |
| Tcell | -0.495 | 0.362 |
| GMCSF | 1.001 | -1.046 |
| IFNab | 0.212 | -0.363 |
| IFNg | -1.376 | -0.673 |
| IFNg_GMCSF1 | 0.826 | -1.012 |
| Rv1432_day32 | 0.0 | 0.139 |
| Rv1565c_day32 | -0.766 | -0.588 |
| secA2_input | 1.86 | 0.445 |
| delta_Rv3594 | 0.268 | -0.061 |
| delta_Rv3717 | 0.677 | 1.233 |
| delta_Rv3811 | -0.07 | 0.559 |
| delta_Rv0954 | -2.109 | -1.562 |
| PonA1 | -1.324 | -1.2 |
| EccD1_KO | 0.0 | 0.0 |
| EspI_KO | -1.668 | 0.211 |
| PE35_KO | -0.239 | 0.42 |
| PPE68_KO | 0.0 | -0.512 |
| glycerol2 | -1.188 | -1.073 |
| lignocerate | -1.425 | -0.22 |
| oleate | -0.614 | -1.086 |
| phosphatidylcholine | -1.639 | 0.224 |
| acetate | -0.603 | 0.507 |
| glucAc | -0.78 | 0.279 |
| Rv0950ko | -0.793 | 0.0 |
| Rv1096ko | 2.223 | -0.832 |
| Rv3684ko | 0.255 | -1.159 |
| delta_otsA_trehalose | 0.366 | -0.773 |