Top 10 genes with highest correlation to Rv1701/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3261/fbiA | (cc=0.6643) | info on Rv3261/fbiA |
| Rv3624c/hpt | (cc=0.6307) | info on Rv3624c/hpt |
| Rv2737c/recA | (cc=0.6242) | info on Rv2737c/recA |
| Rv1908c/katG | (cc=0.618) | info on Rv1908c/katG |
| Rv3715c/recR | (cc=0.6058) | info on Rv3715c/recR |
| Rv1340/rphA | (cc=0.5892) | info on Rv1340/rphA |
| Rv2259/mscR | (cc=0.5675) | info on Rv2259/mscR |
| Rv2373c/dnaJ2 | (cc=0.5609) | info on Rv2373c/dnaJ2 |
| Rv1633/uvrB | (cc=0.5601) | info on Rv1633/uvrB |
| Rv1638/uvrA | (cc=0.5518) | info on Rv1638/uvrA |
Correlation of Rv1701/- with Rv3261/fbiA
Normalized LFCs for Rv1701/-:
(description and provenance of datasets)
| Rv1701/- | Rv3261/fbiA | |
| Fe_supp_jason_reseq | 0.538 | 2.742 |
| low_pH_jason_reseq | -0.345 | 1.772 |
| NO_jason_reseq | 0.0 | -0.331 |
| B6_jason_reseq | -0.649 | -0.292 |
| MHCII_jason_reseq | -0.315 | -0.257 |
| Isoniazid02 | 0.63 | 2.648 |
| Rifampicin4 | -1.995 | -1.042 |
| Ethambutol3 | -1.048 | 1.008 |
| Meropenem3 | -0.744 | -1.611 |
| Vancomycin16 | -0.512 | -1.295 |
| Rv2680_day32 | -0.459 | -0.249 |
| H37Rv_KO_MarP | -1.205 | -1.647 |
| hypoxia_3wks | -0.722 | -1.543 |
| hypoxia_6wks | -0.808 | -1.599 |
| glycerol | 2.741 | 4.014 |
| cholesterol | 2.486 | 3.239 |
| AJ | -0.442 | 0.442 |
| Bibs02 | -0.167 | 0.642 |
| Bibs02c | -0.399 | 1.028 |
| BL6 | -0.114 | 0.125 |
| BL6a | -0.181 | 1.099 |
| BXD01 | -0.248 | 0.0 |
| BXD010 | -0.244 | 0.0 |
| BXD011 | 0.0 | 0.54 |
| BXD03 | 0.113 | 0.258 |
| BXD04 | -0.236 | 0.607 |
| BXD05 | 0.0 | 0.369 |
| BXD06 | -0.254 | 0.967 |
| BXD07 | 0.0 | 0.264 |
| BXD08 | -0.253 | 0.0 |
| BXD09 | -0.268 | 0.386 |
| CAST | -0.439 | 0.0 |
| CCcont | 2.164 | 3.917 |
| DS01 | -0.45 | 2.946 |
| DS02 | 0.0 | 0.217 |
| DS04 | 0.0 | 1.504 |
| DS0c | -0.413 | 2.167 |
| GP01 | -0.188 | 0.0 |
| GP02 | -0.159 | 0.0 |
| GP0c | 0.303 | 0.0 |
| NOD | -0.205 | 0.0 |
| NZO | -0.38 | 0.0 |
| PWK | -0.374 | 0.0 |
| H37Rv_KO_CtpC | -0.148 | 0.446 |
| H37Rv_KO_CtpD | 0.295 | 0.778 |
| H37Rv_KO_Rv1272 | -0.129 | 0.387 |
| H37Rv_KO_SugABC | 0.0 | 0.906 |
| H37Rv_KO_MbtN | 0.0 | 0.572 |
| Trans05 | -0.119 | 0.131 |
| macrophage_unactivated | 0.0 | 0.701 |
| IL1 | -0.374 | -0.78 |
| Rapamycin | -0.387 | -0.807 |
| Tcell | 0.0 | -0.411 |
| GMCSF | 0.0 | -0.694 |
| IFNab | 0.0 | -0.381 |
| IFNg | 0.307 | -0.337 |
| IFNg_GMCSF1 | -0.396 | 0.0 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -1.339 | 2.178 |
| secA2_input | -0.423 | -1.085 |
| delta_Rv3594 | 0.281 | 1.346 |
| delta_Rv3717 | -0.415 | -0.81 |
| delta_Rv3811 | -0.553 | 1.163 |
| delta_Rv0954 | 0.163 | 2.602 |
| PonA1 | -0.753 | 2.057 |
| EccD1_KO | -2.529 | -0.678 |
| EspI_KO | -1.76 | -0.465 |
| PE35_KO | -0.805 | 0.814 |
| PPE68_KO | -1.133 | -0.125 |
| glycerol2 | -1.712 | -1.81 |
| lignocerate | -1.348 | -3.276 |
| oleate | -1.911 | -4.009 |
| phosphatidylcholine | -1.711 | -3.961 |
| acetate | -0.178 | 0.256 |
| glucAc | 0.375 | -0.131 |
| Rv0950ko | -0.814 | -1.022 |
| Rv1096ko | -0.446 | -0.425 |
| Rv3684ko | -1.32 | -0.711 |
| delta_otsA_trehalose | -0.311 | -0.928 |