TnSeqCorr

Top 10 genes with highest correlation to Rv1674c/-:

update plotcorrelationlink to info on gene
Rv1070c/echA8 (cc=0.6033) info on Rv1070c/echA8
Rv3055/- (cc=0.5601) info on Rv3055/-
Rv1367c/- (cc=0.544) info on Rv1367c/-
Rv1737c/narK2 (cc=0.5436) info on Rv1737c/narK2
Rv2490c/PE_PGRS43 (cc=0.5357) info on Rv2490c/PE_PGRS43
Rv2872/vapC43 (cc=0.5247) info on Rv2872/vapC43
Rv0840c/pip (cc=0.5242) info on Rv0840c/pip
Rv1089/PE10 (cc=0.5179) info on Rv1089/PE10
Rv2426c/- (cc=0.5152) info on Rv2426c/-
Rv3354/- (cc=0.5073) info on Rv3354/-

Correlation of Rv1674c/- with Rv3055/-

Normalized LFCs for Rv1674c/-:
(description and provenance of datasets)
Rv1674c/-Rv3055/-
Fe_supp_jason_reseq

0.107

-0.038

low_pH_jason_reseq

-1.745

-1.819

NO_jason_reseq

-0.268

-1.748

B6_jason_reseq

0.765

-0.069

MHCII_jason_reseq

0.621

-0.203

Isoniazid02

-0.127

0.0

Rifampicin4

-0.032

0.306

Ethambutol3

3.103

0.95

Meropenem3

-0.426

1.065

Vancomycin16

-0.199

0.554

Rv2680_day32

-0.066

0.761

H37Rv_KO_MarP

1.245

0.354

hypoxia_3wks

-0.554

-0.347

hypoxia_6wks

-0.727

-1.042

glycerol

0.076

-0.515

cholesterol

-0.045

-1.488

AJ

0.798

0.042

Bibs02

0.37

-0.523

Bibs02c

0.271

-0.703

BL6

0.253

-0.993

BL6a

-0.535

-0.894

BXD01

-0.64

-0.426

BXD010

-0.744

-1.402

BXD011

-0.45

-0.563

BXD03

-2.001

-0.923

BXD04

-0.286

0.632

BXD05

-0.461

-0.967

BXD06

-0.849

-1.168

BXD07

-1.419

-0.913

BXD08

-0.151

-1.242

BXD09

-0.673

-1.333

CAST

-0.184

0.123

CCcont

-0.289

-0.225

DS01

-0.616

-0.958

DS02

0.466

-1.966

DS04

0.802

0.298

DS0c

0.251

0.013

GP01

-0.879

0.765

GP02

1.05

2.108

GP0c

-0.17

1.447

NOD

-0.996

-0.718

NZO

0.104

-0.571

PWK

-0.325

-0.692

H37Rv_KO_CtpC

-1.699

-1.75

H37Rv_KO_CtpD

1.108

-0.895

H37Rv_KO_Rv1272

0.454

-1.317

H37Rv_KO_SugABC

-1.435

-0.799

H37Rv_KO_MbtN

-1.015

-0.993

Trans05

0.106

-1.181

macrophage_unactivated

-1.36

0.593

IL1

-1.026

-0.528

Rapamycin

-0.362

0.052

Tcell

0.156

-0.58

GMCSF

1.885

0.613

IFNab

-1.24

-1.088

IFNg

-0.711

-2.248

IFNg_GMCSF1

-1.496

0.817

Rv1432_day32

0.405

-1.304

Rv1565c_day32

0.911

0.147

secA2_input

0.069

1.935

delta_Rv3594

0.113

-1.837

delta_Rv3717

-0.058

-1.419

delta_Rv3811

0.214

-1.404

delta_Rv0954

0.306

-1.24

PonA1

-0.881

-0.39

EccD1_KO

2.253

2.911

EspI_KO

0.582

1.517

PE35_KO

2.727

2.214

PPE68_KO

2.675

3.443

glycerol2

0.303

1.407

lignocerate

0.918

0.838

oleate

0.306

0.502

phosphatidylcholine

0.919

1.241

acetate

0.69

0.083

glucAc

0.716

0.164

Rv0950ko

0.537

-0.727

Rv1096ko

1.695

1.716

Rv3684ko

0.917

0.252

delta_otsA_trehalose

-1.084

-0.491