Top 10 genes with highest correlation to Rv1648/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3344c/PE_PGRS49 | (cc=0.4907) | info on Rv3344c/PE_PGRS49 |
| Rv2841c/nusA | (cc=0.4844) | info on Rv2841c/nusA |
| Rv3509c/ilvX | (cc=0.4684) | info on Rv3509c/ilvX |
| Rv0578c/PE_PGRS7 | (cc=0.453) | info on Rv0578c/PE_PGRS7 |
| Rv0741/- | (cc=0.4337) | info on Rv0741/- |
| Rv0341/iniB | (cc=0.4309) | info on Rv0341/iniB |
| Rv3825c/pks2 | (cc=0.4221) | info on Rv3825c/pks2 |
| Rv1902c/nanT | (cc=0.4172) | info on Rv1902c/nanT |
| Rv0656c/vapC6 | (cc=0.415) | info on Rv0656c/vapC6 |
| Rv0984/moaB2 | (cc=0.414) | info on Rv0984/moaB2 |
Correlation of Rv1648/- with Rv1902c/nanT
Normalized LFCs for Rv1648/-:
(description and provenance of datasets)
| Rv1648/- | Rv1902c/nanT | |
| Fe_supp_jason_reseq | -0.204 | 0.36 |
| low_pH_jason_reseq | -0.44 | -0.361 |
| NO_jason_reseq | 0.979 | 0.41 |
| B6_jason_reseq | 0.273 | -0.02 |
| MHCII_jason_reseq | 0.323 | 0.453 |
| Isoniazid02 | 1.326 | 0.25 |
| Rifampicin4 | -0.466 | 0.241 |
| Ethambutol3 | 1.125 | 0.195 |
| Meropenem3 | -0.228 | 0.074 |
| Vancomycin16 | 0.069 | -0.133 |
| Rv2680_day32 | 0.303 | 0.039 |
| H37Rv_KO_MarP | -0.347 | -0.143 |
| hypoxia_3wks | -0.335 | -0.04 |
| hypoxia_6wks | 0.37 | 0.079 |
| glycerol | -0.161 | -0.161 |
| cholesterol | 0.162 | 0.442 |
| AJ | 0.277 | -0.069 |
| Bibs02 | -0.257 | -0.266 |
| Bibs02c | -0.218 | -0.024 |
| BL6 | 0.351 | -0.383 |
| BL6a | -0.036 | -0.197 |
| BXD01 | -0.386 | -0.039 |
| BXD010 | -0.041 | -0.476 |
| BXD011 | -0.506 | 0.265 |
| BXD03 | -0.019 | 0.085 |
| BXD04 | 0.38 | 0.164 |
| BXD05 | -0.382 | 0.241 |
| BXD06 | -0.208 | -0.132 |
| BXD07 | 0.037 | -0.128 |
| BXD08 | -0.628 | -0.132 |
| BXD09 | -0.459 | -0.355 |
| CAST | 0.394 | 0.0 |
| CCcont | -0.163 | 0.0 |
| DS01 | -0.087 | 0.055 |
| DS02 | -0.711 | -0.347 |
| DS04 | 0.263 | 0.022 |
| DS0c | -1.134 | -0.3 |
| GP01 | -0.133 | 0.368 |
| GP02 | 0.943 | 0.124 |
| GP0c | 0.207 | -0.441 |
| NOD | -0.114 | -0.452 |
| NZO | -0.009 | -0.402 |
| PWK | 0.358 | 0.08 |
| H37Rv_KO_CtpC | -0.015 | 0.181 |
| H37Rv_KO_CtpD | 0.381 | -0.184 |
| H37Rv_KO_Rv1272 | 1.044 | 0.988 |
| H37Rv_KO_SugABC | -0.299 | 0.852 |
| H37Rv_KO_MbtN | -0.082 | -0.178 |
| Trans05 | 0.213 | 1.209 |
| macrophage_unactivated | -0.694 | -0.29 |
| IL1 | -0.409 | -0.991 |
| Rapamycin | -0.819 | -0.694 |
| Tcell | -1.137 | -0.587 |
| GMCSF | -0.177 | -0.536 |
| IFNab | -1.055 | -0.789 |
| IFNg | -0.631 | -0.481 |
| IFNg_GMCSF1 | -0.691 | -0.031 |
| Rv1432_day32 | 0.291 | 0.361 |
| Rv1565c_day32 | -0.262 | -0.133 |
| secA2_input | 0.435 | -0.042 |
| delta_Rv3594 | 0.642 | 1.184 |
| delta_Rv3717 | 0.293 | 0.381 |
| delta_Rv3811 | 0.419 | 0.561 |
| delta_Rv0954 | 1.128 | 0.329 |
| PonA1 | 1.114 | 0.796 |
| EccD1_KO | -0.408 | 0.516 |
| EspI_KO | -0.017 | 0.399 |
| PE35_KO | -0.225 | 0.053 |
| PPE68_KO | -0.646 | 0.394 |
| glycerol2 | -0.56 | 0.345 |
| lignocerate | -0.114 | 0.312 |
| oleate | -0.909 | 0.527 |
| phosphatidylcholine | -0.169 | 0.396 |
| acetate | -0.309 | 0.264 |
| glucAc | 0.085 | 0.079 |
| Rv0950ko | 0.087 | 0.416 |
| Rv1096ko | 0.443 | -0.235 |
| Rv3684ko | 0.481 | -0.255 |
| delta_otsA_trehalose | 0.314 | 1.293 |