Top 10 genes with highest correlation to Rv1614/lgt:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2332/mez | (cc=0.5638) | info on Rv2332/mez |
| Rv1182/papA3 | (cc=0.5186) | info on Rv1182/papA3 |
| Rv3204/- | (cc=0.5176) | info on Rv3204/- |
| Rv3018c/PPE46 | (cc=0.5109) | info on Rv3018c/PPE46 |
| Rv1737c/narK2 | (cc=0.455) | info on Rv1737c/narK2 |
| Rv0846c/- | (cc=0.4508) | info on Rv0846c/- |
| Rv3358/relK | (cc=0.4465) | info on Rv3358/relK |
| Rv3197A/whiB7 | (cc=0.4463) | info on Rv3197A/whiB7 |
| Rv2599/- | (cc=0.4429) | info on Rv2599/- |
| Rv1070c/echA8 | (cc=0.4426) | info on Rv1070c/echA8 |
Correlation of Rv1614/lgt with Rv0846c/-
Normalized LFCs for Rv1614/lgt:
(description and provenance of datasets)
| Rv1614/lgt | Rv0846c/- | |
| Fe_supp_jason_reseq | 0.605 | -0.444 |
| low_pH_jason_reseq | 0.296 | -0.547 |
| NO_jason_reseq | 0.16 | -0.404 |
| B6_jason_reseq | 0.256 | 1.345 |
| MHCII_jason_reseq | 0.708 | 1.352 |
| Isoniazid02 | 1.638 | 0.8 |
| Rifampicin4 | 0.173 | -0.095 |
| Ethambutol3 | 1.509 | 0.551 |
| Meropenem3 | -0.662 | 0.041 |
| Vancomycin16 | 0.334 | 0.09 |
| Rv2680_day32 | 0.668 | 0.29 |
| H37Rv_KO_MarP | 0.608 | 0.809 |
| hypoxia_3wks | -0.722 | 0.813 |
| hypoxia_6wks | 0.334 | 1.76 |
| glycerol | 0.243 | -0.856 |
| cholesterol | 0.744 | -0.157 |
| AJ | 0.279 | 0.598 |
| Bibs02 | -0.358 | 0.695 |
| Bibs02c | 0.643 | 0.279 |
| BL6 | 0.408 | -0.501 |
| BL6a | 0.369 | -0.34 |
| BXD01 | -0.14 | -0.665 |
| BXD010 | 0.0 | -0.208 |
| BXD011 | -0.372 | 0.01 |
| BXD03 | 0.163 | 0.022 |
| BXD04 | -1.217 | -1.062 |
| BXD05 | 0.94 | 0.216 |
| BXD06 | -0.806 | -0.581 |
| BXD07 | -0.148 | -0.724 |
| BXD08 | -0.581 | -0.318 |
| BXD09 | -0.073 | -0.484 |
| CAST | 1.071 | 0.053 |
| CCcont | 0.145 | -1.231 |
| DS01 | 0.284 | 0.778 |
| DS02 | -0.788 | 0.493 |
| DS04 | -0.634 | 0.427 |
| DS0c | -0.358 | 0.035 |
| GP01 | 0.119 | -0.031 |
| GP02 | 0.172 | -0.715 |
| GP0c | -1.045 | -1.433 |
| NOD | -0.241 | 0.495 |
| NZO | 0.828 | 0.452 |
| PWK | -0.267 | -0.283 |
| H37Rv_KO_CtpC | -0.474 | -1.151 |
| H37Rv_KO_CtpD | -0.951 | 0.246 |
| H37Rv_KO_Rv1272 | -0.412 | 0.011 |
| H37Rv_KO_SugABC | -0.194 | -0.288 |
| H37Rv_KO_MbtN | -0.774 | -0.609 |
| Trans05 | 0.157 | -0.153 |
| macrophage_unactivated | -0.3 | -1.152 |
| IL1 | -1.78 | -0.854 |
| Rapamycin | -1.059 | -1.059 |
| Tcell | -1.522 | -0.587 |
| GMCSF | 0.457 | -0.428 |
| IFNab | -0.704 | -0.871 |
| IFNg | -0.719 | -1.248 |
| IFNg_GMCSF1 | -0.732 | -0.619 |
| Rv1432_day32 | 0.279 | 0.799 |
| Rv1565c_day32 | 0.978 | 0.516 |
| secA2_input | -0.759 | 0.058 |
| delta_Rv3594 | 0.304 | 0.392 |
| delta_Rv3717 | -0.14 | -0.361 |
| delta_Rv3811 | 0.296 | -0.427 |
| delta_Rv0954 | -1.096 | 0.857 |
| PonA1 | -0.419 | -0.675 |
| EccD1_KO | 0.664 | -0.329 |
| EspI_KO | 0.576 | 0.2 |
| PE35_KO | 0.939 | 1.365 |
| PPE68_KO | 1.552 | 0.71 |
| glycerol2 | 0.238 | 0.14 |
| lignocerate | 0.591 | 0.15 |
| oleate | 0.496 | 0.597 |
| phosphatidylcholine | 0.368 | 0.479 |
| acetate | 1.308 | -0.178 |
| glucAc | 0.209 | 0.804 |
| Rv0950ko | -0.63 | -0.048 |
| Rv1096ko | -0.914 | -0.63 |
| Rv3684ko | -1.49 | -0.937 |
| delta_otsA_trehalose | -0.406 | 0.803 |