Top 10 genes with highest correlation to Rv1614/lgt:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2332/mez | (cc=0.5638) | info on Rv2332/mez |
| Rv1182/papA3 | (cc=0.5186) | info on Rv1182/papA3 |
| Rv3204/- | (cc=0.5176) | info on Rv3204/- |
| Rv3018c/PPE46 | (cc=0.5109) | info on Rv3018c/PPE46 |
| Rv1737c/narK2 | (cc=0.455) | info on Rv1737c/narK2 |
| Rv0846c/- | (cc=0.4508) | info on Rv0846c/- |
| Rv3358/relK | (cc=0.4465) | info on Rv3358/relK |
| Rv3197A/whiB7 | (cc=0.4463) | info on Rv3197A/whiB7 |
| Rv2599/- | (cc=0.4429) | info on Rv2599/- |
| Rv1070c/echA8 | (cc=0.4426) | info on Rv1070c/echA8 |
Correlation of Rv1614/lgt with Rv2332/mez
Normalized LFCs for Rv1614/lgt:
(description and provenance of datasets)
| Rv1614/lgt | Rv2332/mez | |
| Fe_supp_jason_reseq | 0.605 | 0.751 |
| low_pH_jason_reseq | 0.296 | -0.437 |
| NO_jason_reseq | 0.16 | -0.076 |
| B6_jason_reseq | 0.256 | 0.227 |
| MHCII_jason_reseq | 0.708 | 0.472 |
| Isoniazid02 | 1.638 | 1.672 |
| Rifampicin4 | 0.173 | 0.181 |
| Ethambutol3 | 1.509 | 0.955 |
| Meropenem3 | -0.662 | 0.319 |
| Vancomycin16 | 0.334 | 0.424 |
| Rv2680_day32 | 0.668 | 0.305 |
| H37Rv_KO_MarP | 0.608 | 0.356 |
| hypoxia_3wks | -0.722 | 0.363 |
| hypoxia_6wks | 0.334 | 0.0 |
| glycerol | 0.243 | -0.806 |
| cholesterol | 0.744 | -0.336 |
| AJ | 0.279 | 0.534 |
| Bibs02 | -0.358 | 0.246 |
| Bibs02c | 0.643 | 0.091 |
| BL6 | 0.408 | -0.165 |
| BL6a | 0.369 | -0.06 |
| BXD01 | -0.14 | -0.059 |
| BXD010 | 0.0 | -0.243 |
| BXD011 | -0.372 | 0.103 |
| BXD03 | 0.163 | -0.4 |
| BXD04 | -1.217 | 0.25 |
| BXD05 | 0.94 | -0.103 |
| BXD06 | -0.806 | -0.041 |
| BXD07 | -0.148 | 0.08 |
| BXD08 | -0.581 | -0.276 |
| BXD09 | -0.073 | 0.225 |
| CAST | 1.071 | 0.557 |
| CCcont | 0.145 | -0.365 |
| DS01 | 0.284 | 0.046 |
| DS02 | -0.788 | -0.099 |
| DS04 | -0.634 | 0.423 |
| DS0c | -0.358 | -0.179 |
| GP01 | 0.119 | -0.279 |
| GP02 | 0.172 | -0.658 |
| GP0c | -1.045 | -1.335 |
| NOD | -0.241 | 0.747 |
| NZO | 0.828 | 0.552 |
| PWK | -0.267 | 0.364 |
| H37Rv_KO_CtpC | -0.474 | -0.16 |
| H37Rv_KO_CtpD | -0.951 | 0.103 |
| H37Rv_KO_Rv1272 | -0.412 | 0.208 |
| H37Rv_KO_SugABC | -0.194 | 0.444 |
| H37Rv_KO_MbtN | -0.774 | 0.074 |
| Trans05 | 0.157 | 0.874 |
| macrophage_unactivated | -0.3 | -0.3 |
| IL1 | -1.78 | -0.362 |
| Rapamycin | -1.059 | -0.752 |
| Tcell | -1.522 | -0.609 |
| GMCSF | 0.457 | -0.752 |
| IFNab | -0.704 | -0.396 |
| IFNg | -0.719 | -1.101 |
| IFNg_GMCSF1 | -0.732 | -0.927 |
| Rv1432_day32 | 0.279 | 0.81 |
| Rv1565c_day32 | 0.978 | 0.376 |
| secA2_input | -0.759 | -0.794 |
| delta_Rv3594 | 0.304 | -0.257 |
| delta_Rv3717 | -0.14 | -0.614 |
| delta_Rv3811 | 0.296 | -0.228 |
| delta_Rv0954 | -1.096 | -0.497 |
| PonA1 | -0.419 | 0.433 |
| EccD1_KO | 0.664 | 0.464 |
| EspI_KO | 0.576 | 0.707 |
| PE35_KO | 0.939 | 0.368 |
| PPE68_KO | 1.552 | 0.477 |
| glycerol2 | 0.238 | 0.67 |
| lignocerate | 0.591 | 0.664 |
| oleate | 0.496 | 0.543 |
| phosphatidylcholine | 0.368 | 0.647 |
| acetate | 1.308 | 0.221 |
| glucAc | 0.209 | 0.187 |
| Rv0950ko | -0.63 | -0.555 |
| Rv1096ko | -0.914 | -0.79 |
| Rv3684ko | -1.49 | -1.294 |
| delta_otsA_trehalose | -0.406 | -0.092 |