Top 10 genes with highest correlation to Rv1560/vapB11:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0371c/- | (cc=0.6612) | info on Rv0371c/- |
| Rv3152/nuoH | (cc=0.5913) | info on Rv3152/nuoH |
| Rv3218/- | (cc=0.5641) | info on Rv3218/- |
| Rv3567c/hsaB | (cc=0.545) | info on Rv3567c/hsaB |
| Rv3143/- | (cc=0.5405) | info on Rv3143/- |
| Rv2430c/PPE41 | (cc=0.5295) | info on Rv2430c/PPE41 |
| Rv0930/pstA1 | (cc=0.5255) | info on Rv0930/pstA1 |
| Rv1278/- | (cc=0.5223) | info on Rv1278/- |
| Rv0822c/- | (cc=0.5175) | info on Rv0822c/- |
| Rv1891/- | (cc=0.5081) | info on Rv1891/- |
Correlation of Rv1560/vapB11 with Rv0371c/-
Normalized LFCs for Rv1560/vapB11:
(description and provenance of datasets)
| Rv1560/vapB11 | Rv0371c/- | |
| Fe_supp_jason_reseq | -2.395 | -0.439 |
| low_pH_jason_reseq | -0.151 | -0.776 |
| NO_jason_reseq | 0.591 | -0.614 |
| B6_jason_reseq | -2.447 | -1.467 |
| MHCII_jason_reseq | -1.809 | -1.383 |
| Isoniazid02 | 0.141 | 0.201 |
| Rifampicin4 | 1.17 | 0.0 |
| Ethambutol3 | 0.333 | 0.0 |
| Meropenem3 | 0.488 | 0.0 |
| Vancomycin16 | 0.499 | 0.366 |
| Rv2680_day32 | -1.282 | -0.363 |
| H37Rv_KO_MarP | -0.567 | 0.0 |
| hypoxia_3wks | -1.978 | 0.335 |
| hypoxia_6wks | -0.217 | -0.317 |
| glycerol | -0.157 | 0.385 |
| cholesterol | -0.509 | -0.216 |
| AJ | 0.471 | 1.334 |
| Bibs02 | -0.642 | -0.775 |
| Bibs02c | 3.812 | 1.914 |
| BL6 | 4.189 | 4.166 |
| BL6a | 3.734 | 2.574 |
| BXD01 | 2.879 | 2.329 |
| BXD010 | 2.52 | 3.1 |
| BXD011 | 3.56 | 2.844 |
| BXD03 | 2.371 | 2.737 |
| BXD04 | 1.221 | 1.656 |
| BXD05 | 4.371 | 1.852 |
| BXD06 | 2.466 | 1.957 |
| BXD07 | 2.957 | 2.64 |
| BXD08 | 1.622 | 1.702 |
| BXD09 | 3.392 | 2.582 |
| CAST | -0.179 | 2.478 |
| CCcont | 2.533 | 1.97 |
| DS01 | 0.479 | 1.627 |
| DS02 | 1.493 | 0.972 |
| DS04 | 0.62 | -0.628 |
| DS0c | 3.804 | 0.869 |
| GP01 | 1.109 | 0.067 |
| GP02 | 2.859 | 2.203 |
| GP0c | 4.362 | 1.861 |
| NOD | -0.174 | 4.59 |
| NZO | 2.852 | 0.6 |
| PWK | -0.315 | -0.142 |
| H37Rv_KO_CtpC | -0.261 | 0.309 |
| H37Rv_KO_CtpD | -0.445 | 0.0 |
| H37Rv_KO_Rv1272 | 2.605 | 0.811 |
| H37Rv_KO_SugABC | -0.159 | -0.321 |
| H37Rv_KO_MbtN | -0.26 | 2.275 |
| Trans05 | 1.171 | 0.459 |
| macrophage_unactivated | 0.189 | 0.227 |
| IL1 | 0.11 | 0.214 |
| Rapamycin | 0.568 | 0.512 |
| Tcell | 0.567 | 0.326 |
| GMCSF | 1.402 | 0.895 |
| IFNab | 0.877 | 0.302 |
| IFNg | 0.984 | -0.243 |
| IFNg_GMCSF1 | 0.336 | -0.591 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 1.191 | -0.47 |
| delta_Rv3594 | -0.696 | -0.572 |
| delta_Rv3717 | 0.583 | 0.287 |
| delta_Rv3811 | -2.602 | -1.096 |
| delta_Rv0954 | -1.243 | -2.335 |
| PonA1 | 1.973 | -1.928 |
| EccD1_KO | 0.0 | -0.898 |
| EspI_KO | -1.452 | -0.451 |
| PE35_KO | 1.963 | -0.3 |
| PPE68_KO | 0.902 | -0.163 |
| glycerol2 | -0.708 | -0.97 |
| lignocerate | -1.299 | 0.0 |
| oleate | -2.657 | -2.741 |
| phosphatidylcholine | -0.297 | -1.307 |
| acetate | -0.17 | 0.0 |
| glucAc | 0.033 | 0.0 |
| Rv0950ko | 0.941 | -1.122 |
| Rv1096ko | 0.941 | 0.38 |
| Rv3684ko | -1.307 | -0.452 |
| delta_otsA_trehalose | 0.0 | 0.0 |