Top 10 genes with highest correlation to Rv1556/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1753c/PPE24 | (cc=0.4828) | info on Rv1753c/PPE24 |
| Rv2558/- | (cc=0.4322) | info on Rv2558/- |
| Rv3011c/gatA | (cc=0.4305) | info on Rv3011c/gatA |
| Rv2164c/- | (cc=0.4122) | info on Rv2164c/- |
| Rv0142/- | (cc=0.3942) | info on Rv0142/- |
| Rv3790/dprE1 | (cc=0.3937) | info on Rv3790/dprE1 |
| Rv0231/fadE4 | (cc=0.3855) | info on Rv0231/fadE4 |
| Rv0588/yrbE2B | (cc=0.368) | info on Rv0588/yrbE2B |
| Rv3268/- | (cc=0.3573) | info on Rv3268/- |
| Rv1581c/- | (cc=0.3546) | info on Rv1581c/- |
Correlation of Rv1556/- with Rv0588/yrbE2B
Normalized LFCs for Rv1556/-:
(description and provenance of datasets)
| Rv1556/- | Rv0588/yrbE2B | |
| Fe_supp_jason_reseq | -0.691 | -0.254 |
| low_pH_jason_reseq | 0.174 | -0.761 |
| NO_jason_reseq | -0.491 | -0.137 |
| B6_jason_reseq | -0.913 | -0.85 |
| MHCII_jason_reseq | -1.318 | -0.215 |
| Isoniazid02 | -1.077 | -1.806 |
| Rifampicin4 | -1.302 | -0.127 |
| Ethambutol3 | -0.112 | -1.677 |
| Meropenem3 | -1.18 | -1.681 |
| Vancomycin16 | -1.377 | -0.639 |
| Rv2680_day32 | 0.378 | 1.112 |
| H37Rv_KO_MarP | 0.073 | 0.102 |
| hypoxia_3wks | 0.379 | -0.399 |
| hypoxia_6wks | 0.113 | -0.209 |
| glycerol | -0.739 | -0.645 |
| cholesterol | -0.084 | -0.574 |
| AJ | -0.104 | 0.822 |
| Bibs02 | 0.0 | 0.894 |
| Bibs02c | -0.92 | -0.617 |
| BL6 | 0.716 | 0.894 |
| BL6a | -0.637 | 0.512 |
| BXD01 | -0.573 | 0.738 |
| BXD010 | 0.145 | 0.843 |
| BXD011 | -0.171 | 1.88 |
| BXD03 | 0.099 | -0.272 |
| BXD04 | 0.657 | 1.036 |
| BXD05 | -0.48 | 0.348 |
| BXD06 | -0.453 | 1.015 |
| BXD07 | -0.376 | 0.595 |
| BXD08 | -0.361 | 0.753 |
| BXD09 | -0.12 | 0.81 |
| CAST | 0.449 | 0.202 |
| CCcont | -0.629 | 0.73 |
| DS01 | -0.015 | -0.755 |
| DS02 | -0.098 | -0.748 |
| DS04 | 0.295 | 0.07 |
| DS0c | 0.377 | -0.165 |
| GP01 | -0.434 | 0.882 |
| GP02 | 0.592 | -0.047 |
| GP0c | 0.14 | 0.24 |
| NOD | 0.426 | -0.042 |
| NZO | 0.49 | 0.306 |
| PWK | 0.659 | -0.578 |
| H37Rv_KO_CtpC | 0.229 | 0.348 |
| H37Rv_KO_CtpD | -0.344 | 1.415 |
| H37Rv_KO_Rv1272 | -0.189 | 1.169 |
| H37Rv_KO_SugABC | -0.192 | 0.45 |
| H37Rv_KO_MbtN | 0.019 | -0.656 |
| Trans05 | 0.281 | 0.093 |
| macrophage_unactivated | -0.713 | -0.057 |
| IL1 | 0.03 | 0.05 |
| Rapamycin | 0.322 | -0.055 |
| Tcell | -0.371 | 0.541 |
| GMCSF | 1.185 | 0.396 |
| IFNab | 0.148 | 0.051 |
| IFNg | -0.163 | 0.315 |
| IFNg_GMCSF1 | -0.82 | -0.654 |
| Rv1432_day32 | -0.186 | 0.169 |
| Rv1565c_day32 | 0.733 | 0.621 |
| secA2_input | -0.299 | 0.25 |
| delta_Rv3594 | 0.177 | 0.132 |
| delta_Rv3717 | 0.637 | 0.541 |
| delta_Rv3811 | 0.106 | 0.913 |
| delta_Rv0954 | 0.61 | 0.842 |
| PonA1 | 1.466 | 0.546 |
| EccD1_KO | -0.23 | -0.635 |
| EspI_KO | -1.144 | -0.927 |
| PE35_KO | -1.441 | -2.042 |
| PPE68_KO | -0.675 | -1.699 |
| glycerol2 | -0.675 | -0.029 |
| lignocerate | -0.603 | 0.421 |
| oleate | 0.354 | 0.274 |
| phosphatidylcholine | -0.246 | 0.112 |
| acetate | -0.185 | 0.0 |
| glucAc | -0.363 | 0.042 |
| Rv0950ko | -0.13 | 1.984 |
| Rv1096ko | 0.452 | 2.844 |
| Rv3684ko | -0.953 | 1.503 |
| delta_otsA_trehalose | -0.457 | -0.55 |