Top 10 genes with highest correlation to Rv1488/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2663/- | (cc=0.5959) | info on Rv2663/- |
| Rv3689/- | (cc=0.5853) | info on Rv3689/- |
| Rv2350c/plcB | (cc=0.5733) | info on Rv2350c/plcB |
| Rv0831c/- | (cc=0.5562) | info on Rv0831c/- |
| Rv3153/nuoI | (cc=0.5503) | info on Rv3153/nuoI |
| Rv0932c/pstS2 | (cc=0.5486) | info on Rv0932c/pstS2 |
| Rv1386/PE15 | (cc=0.5451) | info on Rv1386/PE15 |
| Rv3840/- | (cc=0.5359) | info on Rv3840/- |
| Rv3125c/PPE49 | (cc=0.5356) | info on Rv3125c/PPE49 |
| Rv3109/moaA1 | (cc=0.533) | info on Rv3109/moaA1 |
Correlation of Rv1488/- with Rv3125c/PPE49
Normalized LFCs for Rv1488/-:
(description and provenance of datasets)
| Rv1488/- | Rv3125c/PPE49 | |
| Fe_supp_jason_reseq | 0.177 | 0.477 |
| low_pH_jason_reseq | -1.091 | -0.905 |
| NO_jason_reseq | -0.053 | -0.341 |
| B6_jason_reseq | 0.089 | -0.782 |
| MHCII_jason_reseq | -0.209 | -0.117 |
| Isoniazid02 | -1.899 | -1.523 |
| Rifampicin4 | 0.623 | 0.601 |
| Ethambutol3 | -0.277 | -0.043 |
| Meropenem3 | -0.646 | -0.69 |
| Vancomycin16 | -0.777 | -0.401 |
| Rv2680_day32 | 0.748 | 0.166 |
| H37Rv_KO_MarP | -0.444 | 0.416 |
| hypoxia_3wks | 0.654 | 0.156 |
| hypoxia_6wks | 0.725 | -0.301 |
| glycerol | 0.439 | -0.758 |
| cholesterol | -0.435 | -0.625 |
| AJ | 0.323 | -0.407 |
| Bibs02 | 0.621 | -0.477 |
| Bibs02c | -0.72 | -0.565 |
| BL6 | 0.723 | 0.71 |
| BL6a | 0.276 | 0.591 |
| BXD01 | 0.797 | 0.585 |
| BXD010 | 0.533 | 0.68 |
| BXD011 | 0.6 | 0.847 |
| BXD03 | 0.392 | 0.866 |
| BXD04 | 1.853 | 0.919 |
| BXD05 | 0.724 | 1.016 |
| BXD06 | 0.646 | 0.893 |
| BXD07 | 0.813 | 0.858 |
| BXD08 | 1.419 | 0.984 |
| BXD09 | 0.966 | 0.923 |
| CAST | 0.407 | -0.404 |
| CCcont | -0.018 | 0.879 |
| DS01 | -0.84 | -0.524 |
| DS02 | -0.202 | -0.102 |
| DS04 | 0.721 | -0.322 |
| DS0c | -0.317 | -0.137 |
| GP01 | 0.468 | -0.031 |
| GP02 | 0.659 | 0.54 |
| GP0c | 0.352 | -0.314 |
| NOD | 0.199 | -0.034 |
| NZO | 0.877 | -0.98 |
| PWK | 0.386 | -0.206 |
| H37Rv_KO_CtpC | 0.778 | 0.68 |
| H37Rv_KO_CtpD | 1.127 | 1.285 |
| H37Rv_KO_Rv1272 | 0.943 | 0.806 |
| H37Rv_KO_SugABC | 0.466 | 1.266 |
| H37Rv_KO_MbtN | 0.016 | 0.88 |
| Trans05 | 0.575 | 0.694 |
| macrophage_unactivated | -0.644 | -0.126 |
| IL1 | -0.139 | -0.208 |
| Rapamycin | -0.341 | -0.365 |
| Tcell | -0.029 | -0.326 |
| GMCSF | -0.496 | -0.137 |
| IFNab | -0.215 | -0.396 |
| IFNg | -0.283 | -0.045 |
| IFNg_GMCSF1 | -0.132 | 0.493 |
| Rv1432_day32 | 1.222 | -0.063 |
| Rv1565c_day32 | 0.079 | -0.232 |
| secA2_input | 1.046 | -0.567 |
| delta_Rv3594 | -0.135 | 0.347 |
| delta_Rv3717 | -0.461 | 0.193 |
| delta_Rv3811 | -0.233 | 0.454 |
| delta_Rv0954 | 0.391 | -0.619 |
| PonA1 | -0.403 | -0.02 |
| EccD1_KO | 0.158 | 0.355 |
| EspI_KO | -0.742 | 0.191 |
| PE35_KO | 0.347 | 0.292 |
| PPE68_KO | 0.186 | 0.054 |
| glycerol2 | -0.052 | -0.175 |
| lignocerate | 0.298 | -0.373 |
| oleate | 1.141 | -0.034 |
| phosphatidylcholine | 0.113 | -0.269 |
| acetate | -0.485 | -0.595 |
| glucAc | -0.085 | -0.52 |
| Rv0950ko | 0.492 | 0.35 |
| Rv1096ko | 0.244 | 0.06 |
| Rv3684ko | 0.626 | -0.157 |
| delta_otsA_trehalose | -0.687 | -1.215 |