Top 10 genes with highest correlation to Rv1452c/PE_PGRS28:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0336/- | (cc=0.5509) | info on Rv0336/- |
| Rv1450c/PE_PGRS27 | (cc=0.548) | info on Rv1450c/PE_PGRS27 |
| Rv0833/PE_PGRS13 | (cc=0.5475) | info on Rv0833/PE_PGRS13 |
| Rv1067c/PE_PGRS19 | (cc=0.5443) | info on Rv1067c/PE_PGRS19 |
| Rv2649/- | (cc=0.5406) | info on Rv2649/- |
| Rv3507/PE_PGRS53 | (cc=0.5389) | info on Rv3507/PE_PGRS53 |
| Rv1759c/wag22 | (cc=0.5333) | info on Rv1759c/wag22 |
| Rv2355/- | (cc=0.5299) | info on Rv2355/- |
| Rv1756c/- | (cc=0.5276) | info on Rv1756c/- |
| Rv1004c/- | (cc=0.523) | info on Rv1004c/- |
Correlation of Rv1452c/PE_PGRS28 with Rv1004c/-
Normalized LFCs for Rv1452c/PE_PGRS28:
(description and provenance of datasets)
| Rv1452c/PE_PGRS28 | Rv1004c/- | |
| Fe_supp_jason_reseq | -0.046 | -0.445 |
| low_pH_jason_reseq | -0.765 | -0.674 |
| NO_jason_reseq | -0.396 | 0.039 |
| B6_jason_reseq | -0.24 | -0.394 |
| MHCII_jason_reseq | 0.75 | 0.324 |
| Isoniazid02 | 1.064 | -0.093 |
| Rifampicin4 | 0.636 | 0.165 |
| Ethambutol3 | 0.911 | 1.51 |
| Meropenem3 | 1.12 | 0.527 |
| Vancomycin16 | 0.027 | 0.379 |
| Rv2680_day32 | -0.669 | 0.138 |
| H37Rv_KO_MarP | -0.555 | 0.33 |
| hypoxia_3wks | 0.0 | 0.279 |
| hypoxia_6wks | -0.411 | -0.39 |
| glycerol | 1.849 | 0.714 |
| cholesterol | 0.649 | 0.292 |
| AJ | 1.04 | 0.81 |
| Bibs02 | 1.558 | 0.138 |
| Bibs02c | 1.122 | 0.493 |
| BL6 | 0.057 | -1.506 |
| BL6a | 0.462 | -0.036 |
| BXD01 | 0.149 | -0.184 |
| BXD010 | -0.125 | -0.421 |
| BXD011 | 0.306 | -0.985 |
| BXD03 | 0.132 | -0.423 |
| BXD04 | 0.1 | 0.212 |
| BXD05 | 0.667 | -0.41 |
| BXD06 | -0.187 | -0.718 |
| BXD07 | 0.323 | -0.274 |
| BXD08 | 0.34 | 0.151 |
| BXD09 | 0.039 | -1.141 |
| CAST | 0.719 | -0.232 |
| CCcont | -0.325 | -1.537 |
| DS01 | 0.31 | 0.429 |
| DS02 | 0.474 | 0.35 |
| DS04 | 1.313 | 1.043 |
| DS0c | -0.041 | -0.162 |
| GP01 | 0.825 | 0.82 |
| GP02 | 1.219 | 0.257 |
| GP0c | 1.25 | 0.349 |
| NOD | 1.396 | 0.013 |
| NZO | 0.595 | -0.863 |
| PWK | 0.192 | -0.402 |
| H37Rv_KO_CtpC | 0.993 | 0.048 |
| H37Rv_KO_CtpD | 1.665 | 0.852 |
| H37Rv_KO_Rv1272 | -0.095 | 0.042 |
| H37Rv_KO_SugABC | 0.531 | -0.087 |
| H37Rv_KO_MbtN | 0.843 | -0.348 |
| Trans05 | 0.095 | 0.422 |
| macrophage_unactivated | -0.028 | -1.032 |
| IL1 | 0.05 | -0.584 |
| Rapamycin | -0.276 | -1.132 |
| Tcell | -0.74 | -0.935 |
| GMCSF | 0.734 | -1.048 |
| IFNab | -0.656 | -1.56 |
| IFNg | -0.048 | -1.636 |
| IFNg_GMCSF1 | -0.057 | -1.477 |
| Rv1432_day32 | 0.754 | 0.799 |
| Rv1565c_day32 | -0.635 | -0.725 |
| secA2_input | -0.653 | -0.584 |
| delta_Rv3594 | -0.217 | -0.119 |
| delta_Rv3717 | 0.477 | 0.165 |
| delta_Rv3811 | -0.125 | 0.235 |
| delta_Rv0954 | -0.667 | 0.019 |
| PonA1 | -0.299 | -0.166 |
| EccD1_KO | 0.724 | -0.125 |
| EspI_KO | -0.345 | -0.054 |
| PE35_KO | 0.079 | -1.205 |
| PPE68_KO | -0.202 | -1.376 |
| glycerol2 | -0.581 | -0.448 |
| lignocerate | -0.567 | -0.492 |
| oleate | -0.345 | 0.539 |
| phosphatidylcholine | -0.164 | 0.09 |
| acetate | -0.982 | -0.637 |
| glucAc | 0.026 | -0.92 |
| Rv0950ko | 0.042 | -0.121 |
| Rv1096ko | 0.223 | -0.072 |
| Rv3684ko | -0.255 | -0.897 |
| delta_otsA_trehalose | -1.019 | -0.838 |