TnSeqCorr

Top 10 genes with highest correlation to Rv1424c/-:

update plotcorrelationlink to info on gene
Rv2083/- (cc=0.5161) info on Rv2083/-
Rv0011c/- (cc=0.5133) info on Rv0011c/-
Rv2136c/- (cc=0.5107) info on Rv2136c/-
Rv3475/- (cc=0.4888) info on Rv3475/-
Rv3022A/PE29 (cc=0.4808) info on Rv3022A/PE29
Rv2355/- (cc=0.4798) info on Rv2355/-
Rv2270/lppN (cc=0.4734) info on Rv2270/lppN
Rv1554/frdC (cc=0.4731) info on Rv1554/frdC
Rv1984c/cfp21 (cc=0.4666) info on Rv1984c/cfp21
Rv2649/- (cc=0.4647) info on Rv2649/-

Correlation of Rv1424c/- with Rv2270/lppN

Normalized LFCs for Rv1424c/-:
(description and provenance of datasets)
Rv1424c/-Rv2270/lppN
Fe_supp_jason_reseq

0.554

0.71

low_pH_jason_reseq

0.035

-0.323

NO_jason_reseq

0.108

-0.318

B6_jason_reseq

0.256

0.63

MHCII_jason_reseq

0.154

-0.077

Isoniazid02

0.226

-0.26

Rifampicin4

0.726

0.401

Ethambutol3

0.039

-0.185

Meropenem3

0.255

0.398

Vancomycin16

0.602

0.096

Rv2680_day32

-0.576

0.184

H37Rv_KO_MarP

-0.044

0.459

hypoxia_3wks

-0.722

-0.315

hypoxia_6wks

0.777

-0.031

glycerol

-0.434

0.553

cholesterol

-0.054

-0.164

AJ

0.413

-0.629

Bibs02

0.128

-1.25

Bibs02c

0.373

0.638

BL6

-0.111

-1.299

BL6a

0.528

-0.033

BXD01

-0.36

-0.933

BXD010

0.594

0.595

BXD011

0.784

0.081

BXD03

-0.231

-1.289

BXD04

0.073

-0.581

BXD05

0.281

0.086

BXD06

0.168

-0.435

BXD07

-0.051

-0.222

BXD08

0.574

-0.931

BXD09

0.375

-0.184

CAST

0.055

-0.324

CCcont

-0.389

-1.924

DS01

0.084

-0.058

DS02

-0.027

-0.246

DS04

0.915

-0.505

DS0c

0.883

-0.284

GP01

0.641

-0.614

GP02

1.001

-0.102

GP0c

0.672

-0.734

NOD

0.054

0.805

NZO

0.532

-0.964

PWK

0.31

0.033

H37Rv_KO_CtpC

0.753

0.104

H37Rv_KO_CtpD

0.728

-0.251

H37Rv_KO_Rv1272

1.669

0.998

H37Rv_KO_SugABC

1.084

0.159

H37Rv_KO_MbtN

0.682

-0.597

Trans05

0.714

0.103

macrophage_unactivated

0.0

-0.376

IL1

-0.629

0.273

Rapamycin

0.531

-0.761

Tcell

-0.355

-0.124

GMCSF

0.169

-0.597

IFNab

-0.46

-0.057

IFNg

1.066

0.43

IFNg_GMCSF1

0.0

0.346

Rv1432_day32

1.701

0.621

Rv1565c_day32

0.782

-1.199

secA2_input

1.071

-1.276

delta_Rv3594

0.408

1.115

delta_Rv3717

0.239

0.203

delta_Rv3811

0.253

1.715

delta_Rv0954

0.27

0.048

PonA1

0.173

-0.235

EccD1_KO

0.395

1.579

EspI_KO

1.184

1.845

PE35_KO

1.345

3.106

PPE68_KO

1.123

3.318

glycerol2

-0.789

-1.544

lignocerate

-0.66

-2.176

oleate

-0.196

-1.198

phosphatidylcholine

-0.508

-1.751

acetate

-1.122

-2.622

glucAc

-0.931

-2.001

Rv0950ko

-0.703

0.464

Rv1096ko

-0.703

-0.341

Rv3684ko

-0.963

-0.144

delta_otsA_trehalose

-0.303

0.272