Top 10 genes with highest correlation to Rv1407/fmu:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2301/cut2 | (cc=0.5437) | info on Rv2301/cut2 |
| Rv2490c/PE_PGRS43 | (cc=0.5291) | info on Rv2490c/PE_PGRS43 |
| Rv2065/cobH | (cc=0.5174) | info on Rv2065/cobH |
| Rv0038/- | (cc=0.4918) | info on Rv0038/- |
| Rv0806c/cpsY | (cc=0.4739) | info on Rv0806c/cpsY |
| Rv3344c/PE_PGRS49 | (cc=0.4645) | info on Rv3344c/PE_PGRS49 |
| Rv3649/- | (cc=0.4553) | info on Rv3649/- |
| Rv0492c/- | (cc=0.4437) | info on Rv0492c/- |
| Rv0630c/recB | (cc=0.439) | info on Rv0630c/recB |
| Rv2966c/- | (cc=0.4354) | info on Rv2966c/- |
Correlation of Rv1407/fmu with Rv2301/cut2
Normalized LFCs for Rv1407/fmu:
(description and provenance of datasets)
| Rv1407/fmu | Rv2301/cut2 | |
| Fe_supp_jason_reseq | -0.467 | -0.688 |
| low_pH_jason_reseq | -2.391 | -1.845 |
| NO_jason_reseq | 0.053 | 0.207 |
| B6_jason_reseq | -1.467 | -0.21 |
| MHCII_jason_reseq | -0.217 | -0.05 |
| Isoniazid02 | 1.15 | -0.048 |
| Rifampicin4 | 0.866 | 0.745 |
| Ethambutol3 | -0.123 | -0.5 |
| Meropenem3 | 0.089 | -0.117 |
| Vancomycin16 | 0.249 | 0.271 |
| Rv2680_day32 | -0.573 | -0.932 |
| H37Rv_KO_MarP | -0.072 | 0.278 |
| hypoxia_3wks | -0.159 | -0.355 |
| hypoxia_6wks | -0.683 | 0.246 |
| glycerol | 2.042 | -0.259 |
| cholesterol | 1.49 | 0.628 |
| AJ | -0.514 | -0.082 |
| Bibs02 | -0.24 | 0.171 |
| Bibs02c | 0.929 | 0.803 |
| BL6 | -0.208 | -0.821 |
| BL6a | 0.23 | 0.098 |
| BXD01 | -0.419 | -0.636 |
| BXD010 | -0.677 | -0.412 |
| BXD011 | -0.962 | -0.344 |
| BXD03 | -0.615 | -0.247 |
| BXD04 | -0.787 | -0.328 |
| BXD05 | -0.934 | -0.021 |
| BXD06 | -0.607 | -0.532 |
| BXD07 | -1.233 | -1.025 |
| BXD08 | -0.246 | -1.213 |
| BXD09 | -0.975 | -0.331 |
| CAST | -0.646 | -0.971 |
| CCcont | 0.214 | -0.078 |
| DS01 | 0.036 | 0.796 |
| DS02 | -0.173 | -0.104 |
| DS04 | 0.698 | -0.093 |
| DS0c | -1.571 | -0.416 |
| GP01 | 0.902 | 0.555 |
| GP02 | -0.34 | 0.101 |
| GP0c | -0.474 | 0.39 |
| NOD | -1.022 | -0.452 |
| NZO | -0.331 | 0.37 |
| PWK | -0.435 | -0.142 |
| H37Rv_KO_CtpC | -0.859 | -1.422 |
| H37Rv_KO_CtpD | -0.407 | -0.505 |
| H37Rv_KO_Rv1272 | 0.346 | -0.251 |
| H37Rv_KO_SugABC | 0.42 | 0.581 |
| H37Rv_KO_MbtN | 0.148 | -0.337 |
| Trans05 | 0.717 | 1.595 |
| macrophage_unactivated | -0.451 | -0.035 |
| IL1 | -0.7 | -0.537 |
| Rapamycin | 0.476 | -0.104 |
| Tcell | -0.274 | -0.228 |
| GMCSF | 0.071 | -0.106 |
| IFNab | -0.166 | 0.169 |
| IFNg | -1.184 | -0.045 |
| IFNg_GMCSF1 | -0.742 | -0.371 |
| Rv1432_day32 | 0.13 | -0.975 |
| Rv1565c_day32 | -0.063 | -0.82 |
| secA2_input | -0.142 | 0.283 |
| delta_Rv3594 | 0.951 | 0.408 |
| delta_Rv3717 | 1.682 | 0.468 |
| delta_Rv3811 | 0.546 | 0.636 |
| delta_Rv0954 | 0.788 | 0.531 |
| PonA1 | -0.631 | -0.432 |
| EccD1_KO | 0.23 | -0.092 |
| EspI_KO | -0.667 | -0.197 |
| PE35_KO | 0.904 | 0.096 |
| PPE68_KO | -0.141 | -0.163 |
| glycerol2 | -0.832 | 0.199 |
| lignocerate | -0.57 | 0.084 |
| oleate | -0.291 | -0.179 |
| phosphatidylcholine | -0.287 | -0.102 |
| acetate | 0.057 | 0.451 |
| glucAc | -0.112 | 0.16 |
| Rv0950ko | 1.089 | 0.603 |
| Rv1096ko | 1.526 | -0.103 |
| Rv3684ko | 0.603 | 0.252 |
| delta_otsA_trehalose | -1.541 | 0.003 |