Top 10 genes with highest correlation to Rv1407/fmu:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2301/cut2 | (cc=0.5437) | info on Rv2301/cut2 |
| Rv2490c/PE_PGRS43 | (cc=0.5291) | info on Rv2490c/PE_PGRS43 |
| Rv2065/cobH | (cc=0.5174) | info on Rv2065/cobH |
| Rv0038/- | (cc=0.4918) | info on Rv0038/- |
| Rv0806c/cpsY | (cc=0.4739) | info on Rv0806c/cpsY |
| Rv3344c/PE_PGRS49 | (cc=0.4645) | info on Rv3344c/PE_PGRS49 |
| Rv3649/- | (cc=0.4553) | info on Rv3649/- |
| Rv0492c/- | (cc=0.4437) | info on Rv0492c/- |
| Rv0630c/recB | (cc=0.439) | info on Rv0630c/recB |
| Rv2966c/- | (cc=0.4354) | info on Rv2966c/- |
Correlation of Rv1407/fmu with Rv2065/cobH
Normalized LFCs for Rv1407/fmu:
(description and provenance of datasets)
| Rv1407/fmu | Rv2065/cobH | |
| Fe_supp_jason_reseq | -0.467 | 1.088 |
| low_pH_jason_reseq | -2.391 | -0.883 |
| NO_jason_reseq | 0.053 | -0.173 |
| B6_jason_reseq | -1.467 | 0.635 |
| MHCII_jason_reseq | -0.217 | 0.568 |
| Isoniazid02 | 1.15 | 1.612 |
| Rifampicin4 | 0.866 | 0.961 |
| Ethambutol3 | -0.123 | 0.071 |
| Meropenem3 | 0.089 | 0.553 |
| Vancomycin16 | 0.249 | 0.817 |
| Rv2680_day32 | -0.573 | 0.67 |
| H37Rv_KO_MarP | -0.072 | 0.35 |
| hypoxia_3wks | -0.159 | -0.303 |
| hypoxia_6wks | -0.683 | -1.562 |
| glycerol | 2.042 | 1.023 |
| cholesterol | 1.49 | 1.205 |
| AJ | -0.514 | -0.155 |
| Bibs02 | -0.24 | 0.444 |
| Bibs02c | 0.929 | 1.079 |
| BL6 | -0.208 | -0.685 |
| BL6a | 0.23 | 0.73 |
| BXD01 | -0.419 | -0.291 |
| BXD010 | -0.677 | -0.537 |
| BXD011 | -0.962 | -0.614 |
| BXD03 | -0.615 | -1.216 |
| BXD04 | -0.787 | 1.751 |
| BXD05 | -0.934 | -1.111 |
| BXD06 | -0.607 | -0.713 |
| BXD07 | -1.233 | -0.836 |
| BXD08 | -0.246 | 0.34 |
| BXD09 | -0.975 | -0.996 |
| CAST | -0.646 | 0.23 |
| CCcont | 0.214 | -0.087 |
| DS01 | 0.036 | 0.529 |
| DS02 | -0.173 | 1.046 |
| DS04 | 0.698 | 0.318 |
| DS0c | -1.571 | 0.085 |
| GP01 | 0.902 | 1.468 |
| GP02 | -0.34 | 1.689 |
| GP0c | -0.474 | 1.738 |
| NOD | -1.022 | 0.643 |
| NZO | -0.331 | 0.11 |
| PWK | -0.435 | -0.131 |
| H37Rv_KO_CtpC | -0.859 | 0.076 |
| H37Rv_KO_CtpD | -0.407 | 0.75 |
| H37Rv_KO_Rv1272 | 0.346 | -0.022 |
| H37Rv_KO_SugABC | 0.42 | 0.308 |
| H37Rv_KO_MbtN | 0.148 | -0.18 |
| Trans05 | 0.717 | 1.34 |
| macrophage_unactivated | -0.451 | -0.991 |
| IL1 | -0.7 | 0.047 |
| Rapamycin | 0.476 | 0.279 |
| Tcell | -0.274 | -0.427 |
| GMCSF | 0.071 | -0.628 |
| IFNab | -0.166 | 0.45 |
| IFNg | -1.184 | -1.521 |
| IFNg_GMCSF1 | -0.742 | 0.239 |
| Rv1432_day32 | 0.13 | 0.544 |
| Rv1565c_day32 | -0.063 | -0.278 |
| secA2_input | -0.142 | 1.237 |
| delta_Rv3594 | 0.951 | -0.133 |
| delta_Rv3717 | 1.682 | 0.081 |
| delta_Rv3811 | 0.546 | 0.54 |
| delta_Rv0954 | 0.788 | 0.941 |
| PonA1 | -0.631 | 0.194 |
| EccD1_KO | 0.23 | -0.372 |
| EspI_KO | -0.667 | -0.639 |
| PE35_KO | 0.904 | 0.198 |
| PPE68_KO | -0.141 | -0.259 |
| glycerol2 | -0.832 | 0.0 |
| lignocerate | -0.57 | 0.112 |
| oleate | -0.291 | 0.445 |
| phosphatidylcholine | -0.287 | 0.483 |
| acetate | 0.057 | 0.211 |
| glucAc | -0.112 | 0.114 |
| Rv0950ko | 1.089 | 1.628 |
| Rv1096ko | 1.526 | 2.15 |
| Rv3684ko | 0.603 | 1.123 |
| delta_otsA_trehalose | -1.541 | -0.728 |