Top 10 genes with highest correlation to Rv1290A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1725c/- | (cc=0.5786) | info on Rv1725c/- |
| Rv2613c/- | (cc=0.5346) | info on Rv2613c/- |
| Rv0089/- | (cc=0.5223) | info on Rv0089/- |
| Rv3167c/- | (cc=0.522) | info on Rv3167c/- |
| Rv2019/- | (cc=0.5198) | info on Rv2019/- |
| Rv2517c/- | (cc=0.5142) | info on Rv2517c/- |
| Rv0396/- | (cc=0.5124) | info on Rv0396/- |
| Rv2405/- | (cc=0.5115) | info on Rv2405/- |
| Rv3056/dinP | (cc=0.5052) | info on Rv3056/dinP |
| Rv1999c/- | (cc=0.5003) | info on Rv1999c/- |
Correlation of Rv1290A/- with Rv2019/-
Normalized LFCs for Rv1290A/-:
(description and provenance of datasets)
| Rv1290A/- | Rv2019/- | |
| Fe_supp_jason_reseq | 1.441 | 0.44 |
| low_pH_jason_reseq | -1.282 | -0.156 |
| NO_jason_reseq | 0.11 | -0.013 |
| B6_jason_reseq | -0.771 | 0.823 |
| MHCII_jason_reseq | 0.935 | 0.456 |
| Isoniazid02 | -0.685 | 0.118 |
| Rifampicin4 | -0.13 | 0.325 |
| Ethambutol3 | -0.349 | -0.124 |
| Meropenem3 | 1.52 | 0.059 |
| Vancomycin16 | -0.194 | 0.273 |
| Rv2680_day32 | -0.359 | 0.594 |
| H37Rv_KO_MarP | 0.025 | -0.807 |
| hypoxia_3wks | -0.339 | -0.845 |
| hypoxia_6wks | -1.539 | 0.578 |
| glycerol | -1.624 | -0.512 |
| cholesterol | -0.218 | 0.244 |
| AJ | -0.602 | -0.373 |
| Bibs02 | -0.223 | -0.021 |
| Bibs02c | -0.796 | -0.635 |
| BL6 | -0.1 | -0.386 |
| BL6a | -1.538 | -0.093 |
| BXD01 | -1.563 | -0.498 |
| BXD010 | -0.559 | 0.09 |
| BXD011 | -1.384 | 0.606 |
| BXD03 | -0.617 | -0.532 |
| BXD04 | -1.76 | -0.494 |
| BXD05 | -2.96 | 0.324 |
| BXD06 | -1.187 | 0.065 |
| BXD07 | -1.505 | -0.054 |
| BXD08 | -2.361 | -0.214 |
| BXD09 | -1.382 | 0.063 |
| CAST | -0.06 | -0.584 |
| CCcont | -0.937 | 0.671 |
| DS01 | -1.032 | 0.474 |
| DS02 | -0.993 | 0.517 |
| DS04 | 0.119 | 0.822 |
| DS0c | -1.215 | -0.702 |
| GP01 | -0.574 | -0.629 |
| GP02 | 2.507 | -0.134 |
| GP0c | -0.337 | 0.009 |
| NOD | -0.371 | 0.068 |
| NZO | -1.835 | -0.046 |
| PWK | 0.365 | 0.044 |
| H37Rv_KO_CtpC | 0.743 | 0.085 |
| H37Rv_KO_CtpD | -2.438 | -0.333 |
| H37Rv_KO_Rv1272 | -1.022 | 1.223 |
| H37Rv_KO_SugABC | 1.676 | 0.041 |
| H37Rv_KO_MbtN | 1.666 | 1.693 |
| Trans05 | 0.298 | 1.087 |
| macrophage_unactivated | -1.259 | -0.83 |
| IL1 | 0.552 | -0.222 |
| Rapamycin | 0.436 | 0.187 |
| Tcell | -0.166 | 0.182 |
| GMCSF | -1.415 | 0.121 |
| IFNab | -2.331 | 0.632 |
| IFNg | -0.422 | -0.444 |
| IFNg_GMCSF1 | -0.496 | -0.468 |
| Rv1432_day32 | 0.0 | 0.055 |
| Rv1565c_day32 | 0.556 | 0.57 |
| secA2_input | -1.67 | -1.367 |
| delta_Rv3594 | 0.092 | 0.838 |
| delta_Rv3717 | -0.96 | -0.186 |
| delta_Rv3811 | -0.29 | 0.697 |
| delta_Rv0954 | -0.596 | -0.151 |
| PonA1 | -0.439 | -0.492 |
| EccD1_KO | -0.086 | 0.927 |
| EspI_KO | 1.791 | 1.03 |
| PE35_KO | 2.345 | 1.52 |
| PPE68_KO | 1.955 | 1.369 |
| glycerol2 | 1.401 | 2.299 |
| lignocerate | 1.386 | 2.763 |
| oleate | 0.0 | -0.062 |
| phosphatidylcholine | 1.594 | 2.346 |
| acetate | 2.79 | 3.72 |
| glucAc | 1.825 | 2.122 |
| Rv0950ko | 1.251 | 0.748 |
| Rv1096ko | 1.028 | -0.461 |
| Rv3684ko | 2.021 | -0.196 |
| delta_otsA_trehalose | -1.964 | 0.21 |