Top 10 genes with highest correlation to Rv1290A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1725c/- | (cc=0.5786) | info on Rv1725c/- |
| Rv2613c/- | (cc=0.5346) | info on Rv2613c/- |
| Rv0089/- | (cc=0.5223) | info on Rv0089/- |
| Rv3167c/- | (cc=0.522) | info on Rv3167c/- |
| Rv2019/- | (cc=0.5198) | info on Rv2019/- |
| Rv2517c/- | (cc=0.5142) | info on Rv2517c/- |
| Rv0396/- | (cc=0.5124) | info on Rv0396/- |
| Rv2405/- | (cc=0.5115) | info on Rv2405/- |
| Rv3056/dinP | (cc=0.5052) | info on Rv3056/dinP |
| Rv1999c/- | (cc=0.5003) | info on Rv1999c/- |
Correlation of Rv1290A/- with Rv1999c/-
Normalized LFCs for Rv1290A/-:
(description and provenance of datasets)
| Rv1290A/- | Rv1999c/- | |
| Fe_supp_jason_reseq | 1.441 | 0.032 |
| low_pH_jason_reseq | -1.282 | -0.609 |
| NO_jason_reseq | 0.11 | 0.239 |
| B6_jason_reseq | -0.771 | -0.061 |
| MHCII_jason_reseq | 0.935 | 0.316 |
| Isoniazid02 | -0.685 | 0.188 |
| Rifampicin4 | -0.13 | 0.628 |
| Ethambutol3 | -0.349 | 0.17 |
| Meropenem3 | 1.52 | -0.29 |
| Vancomycin16 | -0.194 | 0.032 |
| Rv2680_day32 | -0.359 | 0.398 |
| H37Rv_KO_MarP | 0.025 | -0.042 |
| hypoxia_3wks | -0.339 | -0.227 |
| hypoxia_6wks | -1.539 | -0.397 |
| glycerol | -1.624 | -0.499 |
| cholesterol | -0.218 | -0.351 |
| AJ | -0.602 | -0.097 |
| Bibs02 | -0.223 | 0.007 |
| Bibs02c | -0.796 | -0.088 |
| BL6 | -0.1 | -0.925 |
| BL6a | -1.538 | -0.676 |
| BXD01 | -1.563 | -0.679 |
| BXD010 | -0.559 | -0.928 |
| BXD011 | -1.384 | -0.795 |
| BXD03 | -0.617 | -0.578 |
| BXD04 | -1.76 | -0.7 |
| BXD05 | -2.96 | -1.079 |
| BXD06 | -1.187 | -0.89 |
| BXD07 | -1.505 | -0.664 |
| BXD08 | -2.361 | -0.867 |
| BXD09 | -1.382 | -0.907 |
| CAST | -0.06 | -0.35 |
| CCcont | -0.937 | -0.974 |
| DS01 | -1.032 | 0.053 |
| DS02 | -0.993 | 0.118 |
| DS04 | 0.119 | 0.333 |
| DS0c | -1.215 | -0.515 |
| GP01 | -0.574 | 0.218 |
| GP02 | 2.507 | -0.615 |
| GP0c | -0.337 | -0.365 |
| NOD | -0.371 | -0.202 |
| NZO | -1.835 | -0.228 |
| PWK | 0.365 | -0.359 |
| H37Rv_KO_CtpC | 0.743 | -1.177 |
| H37Rv_KO_CtpD | -2.438 | -0.724 |
| H37Rv_KO_Rv1272 | -1.022 | -0.021 |
| H37Rv_KO_SugABC | 1.676 | -0.338 |
| H37Rv_KO_MbtN | 1.666 | -0.29 |
| Trans05 | 0.298 | -0.035 |
| macrophage_unactivated | -1.259 | -0.038 |
| IL1 | 0.552 | -0.522 |
| Rapamycin | 0.436 | -0.623 |
| Tcell | -0.166 | -0.238 |
| GMCSF | -1.415 | 0.356 |
| IFNab | -2.331 | -0.78 |
| IFNg | -0.422 | -0.505 |
| IFNg_GMCSF1 | -0.496 | 0.072 |
| Rv1432_day32 | 0.0 | 0.248 |
| Rv1565c_day32 | 0.556 | 0.122 |
| secA2_input | -1.67 | -0.374 |
| delta_Rv3594 | 0.092 | -0.021 |
| delta_Rv3717 | -0.96 | 0.216 |
| delta_Rv3811 | -0.29 | 0.326 |
| delta_Rv0954 | -0.596 | -0.335 |
| PonA1 | -0.439 | -0.308 |
| EccD1_KO | -0.086 | 0.296 |
| EspI_KO | 1.791 | -0.088 |
| PE35_KO | 2.345 | 0.63 |
| PPE68_KO | 1.955 | 0.31 |
| glycerol2 | 1.401 | 0.765 |
| lignocerate | 1.386 | 0.848 |
| oleate | 0.0 | 0.119 |
| phosphatidylcholine | 1.594 | 0.899 |
| acetate | 2.79 | 0.648 |
| glucAc | 1.825 | 0.925 |
| Rv0950ko | 1.251 | 0.199 |
| Rv1096ko | 1.028 | -0.13 |
| Rv3684ko | 2.021 | 0.445 |
| delta_otsA_trehalose | -1.964 | 0.475 |