Top 10 genes with highest correlation to Rv1279/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2285/- | (cc=0.5662) | info on Rv2285/- |
| Rv2089c/pepE | (cc=0.5395) | info on Rv2089c/pepE |
| Rv1104/- | (cc=0.5362) | info on Rv1104/- |
| Rv1935c/echA13 | (cc=0.5151) | info on Rv1935c/echA13 |
| Rv2319c/- | (cc=0.5132) | info on Rv2319c/- |
| Rv2913c/- | (cc=0.513) | info on Rv2913c/- |
| Rv0962c/lprP | (cc=0.5093) | info on Rv0962c/lprP |
| Rv2515c/- | (cc=0.4948) | info on Rv2515c/- |
| Rv0177/- | (cc=0.4943) | info on Rv0177/- |
| Rv2629/- | (cc=0.4875) | info on Rv2629/- |
Correlation of Rv1279/- with Rv2285/-
Normalized LFCs for Rv1279/-:
(description and provenance of datasets)
| Rv1279/- | Rv2285/- | |
| Fe_supp_jason_reseq | 0.508 | -0.933 |
| low_pH_jason_reseq | 0.13 | 0.684 |
| NO_jason_reseq | 0.399 | 0.089 |
| B6_jason_reseq | 0.578 | 1.203 |
| MHCII_jason_reseq | 0.125 | -0.13 |
| Isoniazid02 | 0.451 | 0.528 |
| Rifampicin4 | 0.065 | 0.043 |
| Ethambutol3 | 0.85 | 0.331 |
| Meropenem3 | 2.217 | 1.58 |
| Vancomycin16 | 0.098 | 0.085 |
| Rv2680_day32 | 0.171 | -0.21 |
| H37Rv_KO_MarP | -0.223 | -0.341 |
| hypoxia_3wks | 0.443 | -0.12 |
| hypoxia_6wks | 0.37 | -0.234 |
| glycerol | -0.884 | 0.152 |
| cholesterol | -0.325 | 0.508 |
| AJ | -0.212 | 0.303 |
| Bibs02 | 0.506 | 0.419 |
| Bibs02c | -0.541 | -0.408 |
| BL6 | -0.008 | -0.632 |
| BL6a | -0.349 | -0.426 |
| BXD01 | -0.326 | -0.915 |
| BXD010 | -0.035 | -0.453 |
| BXD011 | -0.224 | -0.45 |
| BXD03 | -0.114 | -0.5 |
| BXD04 | -0.42 | -0.681 |
| BXD05 | 0.293 | 0.278 |
| BXD06 | 0.0 | -0.208 |
| BXD07 | 0.295 | -0.65 |
| BXD08 | -0.299 | -0.696 |
| BXD09 | -0.118 | -0.157 |
| CAST | 0.092 | 0.334 |
| CCcont | -0.919 | -1.587 |
| DS01 | -0.115 | -0.192 |
| DS02 | -0.199 | 0.306 |
| DS04 | -0.42 | -1.162 |
| DS0c | -0.949 | 0.325 |
| GP01 | 0.389 | -0.129 |
| GP02 | 0.542 | 0.579 |
| GP0c | 0.233 | -0.17 |
| NOD | -0.763 | 0.4 |
| NZO | 0.532 | 0.715 |
| PWK | 0.141 | 0.331 |
| H37Rv_KO_CtpC | 0.095 | -0.805 |
| H37Rv_KO_CtpD | -1.052 | -0.344 |
| H37Rv_KO_Rv1272 | -0.341 | -0.521 |
| H37Rv_KO_SugABC | 0.199 | -0.234 |
| H37Rv_KO_MbtN | -0.888 | -0.782 |
| Trans05 | 0.313 | -0.579 |
| macrophage_unactivated | -0.057 | -0.129 |
| IL1 | -0.219 | 0.03 |
| Rapamycin | 0.055 | -0.427 |
| Tcell | -0.463 | -0.342 |
| GMCSF | 0.14 | -1.336 |
| IFNab | -0.054 | -0.626 |
| IFNg | 0.476 | -0.949 |
| IFNg_GMCSF1 | 0.085 | 0.094 |
| Rv1432_day32 | -0.076 | 0.739 |
| Rv1565c_day32 | 0.711 | -0.248 |
| secA2_input | 0.0 | 0.027 |
| delta_Rv3594 | 0.229 | 0.274 |
| delta_Rv3717 | 1.022 | 0.676 |
| delta_Rv3811 | 0.955 | 0.877 |
| delta_Rv0954 | 0.425 | 0.707 |
| PonA1 | 0.314 | 0.375 |
| EccD1_KO | 0.773 | 1.437 |
| EspI_KO | 0.813 | 0.779 |
| PE35_KO | 0.761 | 0.723 |
| PPE68_KO | 0.953 | 0.835 |
| glycerol2 | -0.406 | -0.513 |
| lignocerate | -0.712 | -0.653 |
| oleate | 0.045 | 0.069 |
| phosphatidylcholine | -0.602 | -0.202 |
| acetate | -0.372 | -0.861 |
| glucAc | -1.103 | -0.887 |
| Rv0950ko | -0.473 | -0.431 |
| Rv1096ko | 0.332 | 0.751 |
| Rv3684ko | 0.498 | 0.508 |
| delta_otsA_trehalose | -0.57 | 0.456 |