Top 10 genes with highest correlation to Rv1265/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0936/pstA2 | (cc=0.444) | info on Rv0936/pstA2 |
| Rv2141c/- | (cc=0.4368) | info on Rv2141c/- |
| Rv0852/fadD16 | (cc=0.4105) | info on Rv0852/fadD16 |
| Rv0677c/mmpS5 | (cc=0.4023) | info on Rv0677c/mmpS5 |
| Rv3661/- | (cc=0.3938) | info on Rv3661/- |
| Rv1077/cbs | (cc=0.3895) | info on Rv1077/cbs |
| Rv0377/- | (cc=0.3866) | info on Rv0377/- |
| Rv2494/vapC38 | (cc=0.3787) | info on Rv2494/vapC38 |
| Rv2943A/- | (cc=0.3785) | info on Rv2943A/- |
| Rv3509c/ilvX | (cc=0.3774) | info on Rv3509c/ilvX |
Correlation of Rv1265/- with Rv0936/pstA2
Normalized LFCs for Rv1265/-:
(description and provenance of datasets)
| Rv1265/- | Rv0936/pstA2 | |
| Fe_supp_jason_reseq | -0.526 | -0.709 |
| low_pH_jason_reseq | -1.163 | -0.507 |
| NO_jason_reseq | -1.481 | -0.134 |
| B6_jason_reseq | -0.429 | 0.712 |
| MHCII_jason_reseq | 0.229 | 1.013 |
| Isoniazid02 | 0.227 | 0.413 |
| Rifampicin4 | 0.617 | -0.114 |
| Ethambutol3 | -0.213 | -0.159 |
| Meropenem3 | 0.143 | 0.42 |
| Vancomycin16 | 0.512 | 0.369 |
| Rv2680_day32 | -1.833 | -1.114 |
| H37Rv_KO_MarP | 0.569 | 0.46 |
| hypoxia_3wks | -0.486 | -0.869 |
| hypoxia_6wks | -0.167 | 0.056 |
| glycerol | 0.585 | 0.768 |
| cholesterol | -0.134 | 0.144 |
| AJ | -1.435 | -0.503 |
| Bibs02 | 1.016 | 0.29 |
| Bibs02c | 1.919 | 0.449 |
| BL6 | -0.211 | -0.65 |
| BL6a | 1.322 | -0.459 |
| BXD01 | -1.307 | -1.0 |
| BXD010 | 0.161 | -0.829 |
| BXD011 | 0.789 | -0.517 |
| BXD03 | -1.357 | -0.175 |
| BXD04 | -0.241 | -1.173 |
| BXD05 | 0.142 | -0.076 |
| BXD06 | 0.575 | -0.959 |
| BXD07 | -0.973 | -0.866 |
| BXD08 | -0.72 | -0.923 |
| BXD09 | 0.283 | -0.758 |
| CAST | 0.1 | -0.072 |
| CCcont | -1.049 | -1.245 |
| DS01 | 0.602 | 0.506 |
| DS02 | -0.202 | 0.203 |
| DS04 | 0.084 | -0.479 |
| DS0c | 1.089 | 0.691 |
| GP01 | -0.935 | -1.29 |
| GP02 | -0.162 | -0.108 |
| GP0c | 0.111 | -0.024 |
| NOD | 0.369 | 0.028 |
| NZO | -1.079 | -0.301 |
| PWK | 0.207 | 0.259 |
| H37Rv_KO_CtpC | -1.072 | -0.98 |
| H37Rv_KO_CtpD | -0.551 | -0.751 |
| H37Rv_KO_Rv1272 | 0.409 | 0.017 |
| H37Rv_KO_SugABC | 1.396 | -0.128 |
| H37Rv_KO_MbtN | -0.868 | -0.337 |
| Trans05 | 0.692 | -1.524 |
| macrophage_unactivated | -0.35 | -1.209 |
| IL1 | -0.16 | -0.572 |
| Rapamycin | 0.16 | -0.344 |
| Tcell | 0.945 | -1.199 |
| GMCSF | -1.993 | -0.929 |
| IFNab | -0.698 | -0.583 |
| IFNg | 0.0 | 0.219 |
| IFNg_GMCSF1 | 0.839 | 0.292 |
| Rv1432_day32 | 0.133 | -0.089 |
| Rv1565c_day32 | 1.275 | 0.873 |
| secA2_input | 1.154 | -0.279 |
| delta_Rv3594 | 0.168 | 0.046 |
| delta_Rv3717 | 0.181 | -0.785 |
| delta_Rv3811 | 0.546 | -0.094 |
| delta_Rv0954 | 0.274 | 0.189 |
| PonA1 | -0.09 | -0.227 |
| EccD1_KO | 0.71 | 0.911 |
| EspI_KO | -0.568 | 0.114 |
| PE35_KO | 0.0 | 1.044 |
| PPE68_KO | 0.288 | 0.832 |
| glycerol2 | -1.499 | -0.998 |
| lignocerate | -0.477 | -0.656 |
| oleate | -1.323 | -0.842 |
| phosphatidylcholine | -1.307 | -0.832 |
| acetate | -0.507 | -0.68 |
| glucAc | -0.501 | -0.449 |
| Rv0950ko | 0.157 | 0.0 |
| Rv1096ko | 0.6 | -0.54 |
| Rv3684ko | 0.17 | -0.383 |
| delta_otsA_trehalose | 0.621 | -1.354 |