Top 10 genes with highest correlation to Rv1187/rocA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2212/- | (cc=0.503) | info on Rv2212/- |
| Rv1549/fadD11.1 | (cc=0.5021) | info on Rv1549/fadD11.1 |
| Rv0616A/vapB29 | (cc=0.4857) | info on Rv0616A/vapB29 |
| Rv0107c/ctpI | (cc=0.4826) | info on Rv0107c/ctpI |
| Rv1915/aceAa | (cc=0.4692) | info on Rv1915/aceAa |
| Rv2020c/- | (cc=0.4645) | info on Rv2020c/- |
| Rv1539/lspA | (cc=0.4499) | info on Rv1539/lspA |
| Rv3204/- | (cc=0.4431) | info on Rv3204/- |
| Rv3078/hab | (cc=0.4384) | info on Rv3078/hab |
| Rv2550c/vapB20 | (cc=0.4362) | info on Rv2550c/vapB20 |
Correlation of Rv1187/rocA with Rv2212/-
Normalized LFCs for Rv1187/rocA:
(description and provenance of datasets)
| Rv1187/rocA | Rv2212/- | |
| Fe_supp_jason_reseq | 0.878 | 0.494 |
| low_pH_jason_reseq | 0.567 | -0.209 |
| NO_jason_reseq | 0.89 | 0.404 |
| B6_jason_reseq | 1.54 | 1.012 |
| MHCII_jason_reseq | 1.224 | 0.151 |
| Isoniazid02 | 0.079 | 0.292 |
| Rifampicin4 | -0.653 | 0.401 |
| Ethambutol3 | 1.437 | 0.401 |
| Meropenem3 | -0.212 | -0.189 |
| Vancomycin16 | -0.151 | 0.064 |
| Rv2680_day32 | -0.565 | 0.484 |
| H37Rv_KO_MarP | -0.409 | 0.452 |
| hypoxia_3wks | -1.109 | -1.116 |
| hypoxia_6wks | 1.171 | 0.292 |
| glycerol | -1.368 | -1.018 |
| cholesterol | 0.0 | -0.12 |
| AJ | 0.842 | 0.642 |
| Bibs02 | 0.621 | -0.465 |
| Bibs02c | -1.417 | -0.33 |
| BL6 | 0.187 | 1.022 |
| BL6a | -0.954 | -0.425 |
| BXD01 | -0.501 | -0.734 |
| BXD010 | -0.617 | 0.437 |
| BXD011 | -0.68 | -0.292 |
| BXD03 | -0.185 | -0.31 |
| BXD04 | -1.235 | -0.599 |
| BXD05 | -1.344 | -0.105 |
| BXD06 | -0.946 | -0.346 |
| BXD07 | -0.598 | -0.555 |
| BXD08 | -0.337 | -0.127 |
| BXD09 | -0.541 | -0.81 |
| CAST | 0.782 | 0.15 |
| CCcont | -0.261 | -0.085 |
| DS01 | 1.063 | -0.056 |
| DS02 | -0.421 | -0.035 |
| DS04 | 0.791 | 0.119 |
| DS0c | -0.506 | -0.151 |
| GP01 | -0.986 | -0.39 |
| GP02 | -0.145 | -0.731 |
| GP0c | -1.353 | -0.053 |
| NOD | -0.478 | -0.225 |
| NZO | -0.348 | -0.199 |
| PWK | 0.237 | 0.054 |
| H37Rv_KO_CtpC | -1.203 | -0.872 |
| H37Rv_KO_CtpD | 0.04 | -0.149 |
| H37Rv_KO_Rv1272 | -0.679 | -0.022 |
| H37Rv_KO_SugABC | 1.357 | -1.303 |
| H37Rv_KO_MbtN | -0.869 | -0.081 |
| Trans05 | 0.3 | 0.296 |
| macrophage_unactivated | -0.11 | -0.388 |
| IL1 | -0.658 | -0.3 |
| Rapamycin | -1.344 | -0.74 |
| Tcell | -0.228 | -1.18 |
| GMCSF | 2.308 | 0.153 |
| IFNab | 0.302 | 0.039 |
| IFNg | -0.703 | -0.623 |
| IFNg_GMCSF1 | 0.606 | 0.374 |
| Rv1432_day32 | -0.18 | 0.086 |
| Rv1565c_day32 | 0.806 | -0.246 |
| secA2_input | 1.154 | -0.794 |
| delta_Rv3594 | 0.509 | 1.159 |
| delta_Rv3717 | 0.522 | 0.403 |
| delta_Rv3811 | 0.226 | 0.0 |
| delta_Rv0954 | 0.43 | 1.257 |
| PonA1 | 1.384 | 0.948 |
| EccD1_KO | 0.526 | 0.27 |
| EspI_KO | 0.0 | 0.399 |
| PE35_KO | 0.467 | 0.023 |
| PPE68_KO | 0.634 | 0.557 |
| glycerol2 | -0.08 | 0.872 |
| lignocerate | 0.884 | 1.78 |
| oleate | -1.126 | -0.523 |
| phosphatidylcholine | 0.356 | 1.136 |
| acetate | 1.368 | 1.504 |
| glucAc | 1.455 | 1.463 |
| Rv0950ko | -0.76 | 0.844 |
| Rv1096ko | 0.087 | 0.513 |
| Rv3684ko | -1.687 | -0.472 |
| delta_otsA_trehalose | 1.461 | 0.862 |