Top 10 genes with highest correlation to Rv1165/typA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3920c/- | (cc=0.5499) | info on Rv3920c/- |
| Rv2983/- | (cc=0.535) | info on Rv2983/- |
| Rv3041c/- | (cc=0.5266) | info on Rv3041c/- |
| Rv2125/- | (cc=0.5228) | info on Rv2125/- |
| Rv2831/echA16 | (cc=0.5129) | info on Rv2831/echA16 |
| Rv2404c/lepA | (cc=0.4708) | info on Rv2404c/lepA |
| Rv2672/- | (cc=0.4557) | info on Rv2672/- |
| Rv3557c/- | (cc=0.4503) | info on Rv3557c/- |
| Rv3228/- | (cc=0.4443) | info on Rv3228/- |
| Rv2733c/- | (cc=0.4418) | info on Rv2733c/- |
Correlation of Rv1165/typA with Rv2672/-
Normalized LFCs for Rv1165/typA:
(description and provenance of datasets)
| Rv1165/typA | Rv2672/- | |
| Fe_supp_jason_reseq | -0.191 | 2.265 |
| low_pH_jason_reseq | -0.015 | 0.447 |
| NO_jason_reseq | 0.764 | -2.103 |
| B6_jason_reseq | 0.078 | 0.114 |
| MHCII_jason_reseq | 0.896 | 0.051 |
| Isoniazid02 | 1.302 | 1.539 |
| Rifampicin4 | 0.818 | -0.842 |
| Ethambutol3 | 0.083 | 0.203 |
| Meropenem3 | -0.504 | -0.072 |
| Vancomycin16 | 0.825 | 0.117 |
| Rv2680_day32 | -0.932 | -1.259 |
| H37Rv_KO_MarP | 1.116 | 1.587 |
| hypoxia_3wks | 0.108 | -0.845 |
| hypoxia_6wks | -0.958 | -3.046 |
| glycerol | 1.033 | 0.674 |
| cholesterol | -0.015 | -0.507 |
| AJ | 0.182 | -1.407 |
| Bibs02 | -0.568 | -0.498 |
| Bibs02c | -0.382 | -0.3 |
| BL6 | -0.653 | -0.738 |
| BL6a | -0.397 | -1.07 |
| BXD01 | -0.344 | -1.586 |
| BXD010 | -0.13 | -1.277 |
| BXD011 | -0.136 | -1.177 |
| BXD03 | -0.861 | -1.871 |
| BXD04 | 0.392 | -2.258 |
| BXD05 | -0.455 | -1.41 |
| BXD06 | -0.26 | -2.297 |
| BXD07 | -0.509 | -1.82 |
| BXD08 | 0.097 | -0.854 |
| BXD09 | -0.408 | -1.547 |
| CAST | -0.462 | -1.782 |
| CCcont | -0.281 | 0.955 |
| DS01 | 0.397 | -1.093 |
| DS02 | -0.282 | -0.195 |
| DS04 | -0.09 | -1.84 |
| DS0c | 0.086 | -0.36 |
| GP01 | -0.355 | -0.319 |
| GP02 | 0.033 | -1.151 |
| GP0c | -0.301 | -0.131 |
| NOD | -0.89 | -1.648 |
| NZO | -0.821 | -0.568 |
| PWK | 0.438 | -1.597 |
| H37Rv_KO_CtpC | -0.297 | -0.269 |
| H37Rv_KO_CtpD | -0.201 | 0.36 |
| H37Rv_KO_Rv1272 | -0.601 | -1.062 |
| H37Rv_KO_SugABC | 0.2 | 1.062 |
| H37Rv_KO_MbtN | 1.249 | -0.977 |
| Trans05 | -0.38 | -1.476 |
| macrophage_unactivated | 0.025 | 0.319 |
| IL1 | 0.154 | 0.05 |
| Rapamycin | 0.092 | -0.052 |
| Tcell | 0.049 | -1.15 |
| GMCSF | 0.309 | 1.341 |
| IFNab | 0.248 | 1.421 |
| IFNg | 0.198 | 1.05 |
| IFNg_GMCSF1 | 0.025 | 0.613 |
| Rv1432_day32 | -0.841 | -2.564 |
| Rv1565c_day32 | 0.308 | -0.313 |
| secA2_input | 0.045 | 0.933 |
| delta_Rv3594 | 0.75 | 0.595 |
| delta_Rv3717 | 0.43 | 0.179 |
| delta_Rv3811 | 0.886 | 0.308 |
| delta_Rv0954 | 0.373 | 0.762 |
| PonA1 | 0.738 | -0.885 |
| EccD1_KO | -0.056 | 0.638 |
| EspI_KO | 0.26 | -0.348 |
| PE35_KO | 0.359 | 0.149 |
| PPE68_KO | -0.029 | -0.211 |
| glycerol2 | -1.391 | -1.333 |
| lignocerate | -0.374 | -1.045 |
| oleate | -1.202 | -3.595 |
| phosphatidylcholine | -0.462 | -1.244 |
| acetate | -0.387 | 0.261 |
| glucAc | -0.062 | 0.034 |
| Rv0950ko | -0.075 | 0.715 |
| Rv1096ko | 0.386 | 0.115 |
| Rv3684ko | -0.4 | -0.128 |
| delta_otsA_trehalose | 0.429 | -1.288 |