Top 10 genes with highest correlation to Rv1165/typA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3920c/- | (cc=0.5499) | info on Rv3920c/- |
| Rv2983/- | (cc=0.535) | info on Rv2983/- |
| Rv3041c/- | (cc=0.5266) | info on Rv3041c/- |
| Rv2125/- | (cc=0.5228) | info on Rv2125/- |
| Rv2831/echA16 | (cc=0.5129) | info on Rv2831/echA16 |
| Rv2404c/lepA | (cc=0.4708) | info on Rv2404c/lepA |
| Rv2672/- | (cc=0.4557) | info on Rv2672/- |
| Rv3557c/- | (cc=0.4503) | info on Rv3557c/- |
| Rv3228/- | (cc=0.4443) | info on Rv3228/- |
| Rv2733c/- | (cc=0.4418) | info on Rv2733c/- |
Correlation of Rv1165/typA with Rv3920c/-
Normalized LFCs for Rv1165/typA:
(description and provenance of datasets)
| Rv1165/typA | Rv3920c/- | |
| Fe_supp_jason_reseq | -0.191 | 1.659 |
| low_pH_jason_reseq | -0.015 | -0.811 |
| NO_jason_reseq | 0.764 | 2.489 |
| B6_jason_reseq | 0.078 | 0.795 |
| MHCII_jason_reseq | 0.896 | 1.408 |
| Isoniazid02 | 1.302 | 1.264 |
| Rifampicin4 | 0.818 | -0.601 |
| Ethambutol3 | 0.083 | 1.903 |
| Meropenem3 | -0.504 | -0.266 |
| Vancomycin16 | 0.825 | -1.234 |
| Rv2680_day32 | -0.932 | -0.672 |
| H37Rv_KO_MarP | 1.116 | 3.769 |
| hypoxia_3wks | 0.108 | -0.295 |
| hypoxia_6wks | -0.958 | -1.297 |
| glycerol | 1.033 | 4.292 |
| cholesterol | -0.015 | 3.005 |
| AJ | 0.182 | 0.274 |
| Bibs02 | -0.568 | 0.898 |
| Bibs02c | -0.382 | 0.168 |
| BL6 | -0.653 | -1.073 |
| BL6a | -0.397 | 0.0 |
| BXD01 | -0.344 | -0.999 |
| BXD010 | -0.13 | -1.227 |
| BXD011 | -0.136 | -0.772 |
| BXD03 | -0.861 | -1.295 |
| BXD04 | 0.392 | -0.498 |
| BXD05 | -0.455 | -0.919 |
| BXD06 | -0.26 | -1.024 |
| BXD07 | -0.509 | -1.326 |
| BXD08 | 0.097 | -1.274 |
| BXD09 | -0.408 | -1.205 |
| CAST | -0.462 | -1.074 |
| CCcont | -0.281 | 1.492 |
| DS01 | 0.397 | 0.53 |
| DS02 | -0.282 | 0.699 |
| DS04 | -0.09 | 1.147 |
| DS0c | 0.086 | -0.289 |
| GP01 | -0.355 | -0.283 |
| GP02 | 0.033 | -0.335 |
| GP0c | -0.301 | 0.942 |
| NOD | -0.89 | -0.524 |
| NZO | -0.821 | -1.711 |
| PWK | 0.438 | 0.158 |
| H37Rv_KO_CtpC | -0.297 | -1.393 |
| H37Rv_KO_CtpD | -0.201 | -0.51 |
| H37Rv_KO_Rv1272 | -0.601 | -1.21 |
| H37Rv_KO_SugABC | 0.2 | 0.154 |
| H37Rv_KO_MbtN | 1.249 | 0.533 |
| Trans05 | -0.38 | -0.893 |
| macrophage_unactivated | 0.025 | 1.982 |
| IL1 | 0.154 | -0.409 |
| Rapamycin | 0.092 | 0.0 |
| Tcell | 0.049 | 0.411 |
| GMCSF | 0.309 | -0.364 |
| IFNab | 0.248 | 0.0 |
| IFNg | 0.198 | -0.369 |
| IFNg_GMCSF1 | 0.025 | 1.093 |
| Rv1432_day32 | -0.841 | -0.18 |
| Rv1565c_day32 | 0.308 | -0.068 |
| secA2_input | 0.045 | 1.147 |
| delta_Rv3594 | 0.75 | 1.348 |
| delta_Rv3717 | 0.43 | 0.307 |
| delta_Rv3811 | 0.886 | 0.944 |
| delta_Rv0954 | 0.373 | 1.243 |
| PonA1 | 0.738 | 1.281 |
| EccD1_KO | -0.056 | 0.276 |
| EspI_KO | 0.26 | -0.528 |
| PE35_KO | 0.359 | 0.099 |
| PPE68_KO | -0.029 | -0.054 |
| glycerol2 | -1.391 | -1.822 |
| lignocerate | -0.374 | -2.043 |
| oleate | -1.202 | -2.379 |
| phosphatidylcholine | -0.462 | -1.671 |
| acetate | -0.387 | 1.548 |
| glucAc | -0.062 | 1.385 |
| Rv0950ko | -0.075 | 0.709 |
| Rv1096ko | 0.386 | -0.112 |
| Rv3684ko | -0.4 | 0.511 |
| delta_otsA_trehalose | 0.429 | -0.596 |