TnSeqCorr

Top 10 genes with highest correlation to Rv1086/-:

update plotcorrelationlink to info on gene
Rv1836c/- (cc=0.6417) info on Rv1836c/-
Rv1821/secA2 (cc=0.5927) info on Rv1821/secA2
Rv2553c/- (cc=0.5752) info on Rv2553c/-
Rv3101c/ftsX (cc=0.5733) info on Rv3101c/ftsX
Rv2166c/- (cc=0.5564) info on Rv2166c/-
Rv3207c/- (cc=0.5466) info on Rv3207c/-
Rv2224c/caeA (cc=0.539) info on Rv2224c/caeA
Rv3671c/- (cc=0.5219) info on Rv3671c/-
Rv3810/pirG (cc=0.5199) info on Rv3810/pirG
Rv2507/- (cc=0.5187) info on Rv2507/-

Correlation of Rv1086/- with Rv1821/secA2

Normalized LFCs for Rv1086/-:
(description and provenance of datasets)
Rv1086/-Rv1821/secA2
Fe_supp_jason_reseq

-0.508

2.155

low_pH_jason_reseq

0.694

-0.151

NO_jason_reseq

-0.845

-0.761

B6_jason_reseq

-0.649

-0.322

MHCII_jason_reseq

-0.572

0.0

Isoniazid02

-0.281

0.105

Rifampicin4

-1.836

-2.039

Ethambutol3

-0.505

-1.437

Meropenem3

-0.648

-1.288

Vancomycin16

-1.799

-3.136

Rv2680_day32

-0.239

0.249

H37Rv_KO_MarP

-2.368

-4.953

hypoxia_3wks

-2.568

-1.571

hypoxia_6wks

-0.672

-0.823

glycerol

-0.654

0.385

cholesterol

1.367

1.678

AJ

-0.983

-0.815

Bibs02

-0.775

-0.642

Bibs02c

-0.887

-0.336

BL6

-0.53

-0.077

BL6a

-0.839

-0.185

BXD01

-0.552

-0.256

BXD010

-0.543

0.276

BXD011

-0.54

0.21

BXD03

-0.315

-0.863

BXD04

-0.4

0.409

BXD05

-0.57

-0.171

BXD06

-0.566

0.04

BXD07

-0.587

-0.375

BXD08

-0.564

0.0

BXD09

-0.596

-0.131

CAST

-0.976

-1.118

CCcont

2.055

2.352

DS01

-1.001

0.07

DS02

-0.922

0.9

DS04

-0.141

-0.059

DS0c

-0.919

0.245

GP01

-0.418

0.408

GP02

-0.353

-0.861

GP0c

-0.303

0.564

NOD

-0.952

-0.441

NZO

-0.845

-0.54

PWK

-0.831

-0.06

H37Rv_KO_CtpC

-0.242

-0.788

H37Rv_KO_CtpD

-0.092

-0.295

H37Rv_KO_Rv1272

-0.598

0.434

H37Rv_KO_SugABC

0.245

1.204

H37Rv_KO_MbtN

0.069

1.345

Trans05

-0.554

0.459

macrophage_unactivated

-0.638

0.922

IL1

-1.05

0.172

Rapamycin

-0.402

0.746

Tcell

0.0

0.629

GMCSF

-0.346

-0.325

IFNab

0.363

0.81

IFNg

0.163

0.716

IFNg_GMCSF1

-0.635

0.091

Rv1432_day32

-0.18

-0.227

Rv1565c_day32

-0.766

-1.03

secA2_input

-4.12

-3.397

delta_Rv3594

1.277

1.048

delta_Rv3717

2.139

1.74

delta_Rv3811

1.396

1.365

delta_Rv0954

-2.35

-0.009

PonA1

-2.984

-0.74

EccD1_KO

0.76

-0.082

EspI_KO

1.024

-0.311

PE35_KO

-1.397

-0.295

PPE68_KO

-0.205

0.051

glycerol2

-0.594

-1.017

lignocerate

-2.541

-1.736

oleate

-1.815

-0.878

phosphatidylcholine

-2.762

-1.448

acetate

0.181

-0.115

glucAc

0.362

-0.536

Rv0950ko

-3.86

-1.119

Rv1096ko

2.796

-0.787

Rv3684ko

1.29

-0.455

delta_otsA_trehalose

0.193

-1.768