TnSeqCorr

Top 10 genes with highest correlation to Rv1075c/-:

update plotcorrelationlink to info on gene
Rv1291c/- (cc=0.599) info on Rv1291c/-
Rv3170/aofH (cc=0.5511) info on Rv3170/aofH
Rv2328/PE23 (cc=0.5508) info on Rv2328/PE23
Rv2854/- (cc=0.5395) info on Rv2854/-
Rv1638A/- (cc=0.5265) info on Rv1638A/-
Rv0791c/- (cc=0.5256) info on Rv0791c/-
Rv0848/cysK2 (cc=0.5214) info on Rv0848/cysK2
Rv0621/- (cc=0.5182) info on Rv0621/-
Rv3431c/- (cc=0.5139) info on Rv3431c/-
Rv2013/- (cc=0.4982) info on Rv2013/-

Correlation of Rv1075c/- with Rv2854/-

Normalized LFCs for Rv1075c/-:
(description and provenance of datasets)
Rv1075c/-Rv2854/-
Fe_supp_jason_reseq

0.058

-0.189

low_pH_jason_reseq

-0.047

-0.485

NO_jason_reseq

0.37

-0.457

B6_jason_reseq

0.761

-0.093

MHCII_jason_reseq

1.053

0.78

Isoniazid02

0.223

-0.627

Rifampicin4

0.655

0.547

Ethambutol3

0.72

0.963

Meropenem3

-0.019

-1.072

Vancomycin16

-0.013

0.082

Rv2680_day32

0.547

-0.161

H37Rv_KO_MarP

-0.272

-0.443

hypoxia_3wks

0.0

0.447

hypoxia_6wks

-0.027

-0.123

glycerol

0.059

-0.455

cholesterol

0.005

-0.48

AJ

0.708

0.163

Bibs02

0.579

-0.449

Bibs02c

0.621

-0.196

BL6

0.098

0.248

BL6a

0.168

0.0

BXD01

-0.325

-0.168

BXD010

-0.301

0.119

BXD011

0.236

-0.494

BXD03

-0.578

-0.238

BXD04

-0.563

0.326

BXD05

0.092

0.545

BXD06

-0.313

-0.21

BXD07

-0.532

0.097

BXD08

-0.402

0.053

BXD09

-0.432

-0.094

CAST

0.042

-0.976

CCcont

-0.414

-0.561

DS01

0.217

0.094

DS02

0.244

-0.09

DS04

0.443

0.136

DS0c

0.475

-0.222

GP01

-1.729

-1.208

GP02

-0.263

-1.538

GP0c

-0.827

-0.616

NOD

-0.129

-0.483

NZO

-0.441

-0.204

PWK

0.166

-0.831

H37Rv_KO_CtpC

-0.547

0.621

H37Rv_KO_CtpD

-1.338

-0.507

H37Rv_KO_Rv1272

-0.365

-0.598

H37Rv_KO_SugABC

-0.751

-0.742

H37Rv_KO_MbtN

0.507

-0.296

Trans05

0.398

-0.417

macrophage_unactivated

0.455

0.732

IL1

-0.018

-0.282

Rapamycin

-0.107

0.239

Tcell

-0.316

0.075

GMCSF

-0.016

-0.349

IFNab

0.018

-0.142

IFNg

-0.259

0.62

IFNg_GMCSF1

0.198

0.412

Rv1432_day32

-0.669

-0.196

Rv1565c_day32

-0.333

0.859

secA2_input

0.817

0.402

delta_Rv3594

1.462

0.052

delta_Rv3717

1.354

0.793

delta_Rv3811

1.286

1.034

delta_Rv0954

1.035

1.358

PonA1

0.925

1.193

EccD1_KO

0.497

0.329

EspI_KO

-0.288

-0.148

PE35_KO

-0.158

-0.312

PPE68_KO

0.275

0.054

glycerol2

-0.352

-0.652

lignocerate

-0.084

-0.783

oleate

0.16

0.011

phosphatidylcholine

-0.097

-0.588

acetate

-0.351

-0.716

glucAc

-0.716

-1.548

Rv0950ko

-0.286

0.678

Rv1096ko

0.024

0.679

Rv3684ko

-0.026

0.383

delta_otsA_trehalose

-1.218

-2.484