TnSeqCorr

Top 10 genes with highest correlation to Rv1075c/-:

update plotcorrelationlink to info on gene
Rv1291c/- (cc=0.599) info on Rv1291c/-
Rv3170/aofH (cc=0.5511) info on Rv3170/aofH
Rv2328/PE23 (cc=0.5508) info on Rv2328/PE23
Rv2854/- (cc=0.5395) info on Rv2854/-
Rv1638A/- (cc=0.5265) info on Rv1638A/-
Rv0791c/- (cc=0.5256) info on Rv0791c/-
Rv0848/cysK2 (cc=0.5214) info on Rv0848/cysK2
Rv0621/- (cc=0.5182) info on Rv0621/-
Rv3431c/- (cc=0.5139) info on Rv3431c/-
Rv2013/- (cc=0.4982) info on Rv2013/-

Correlation of Rv1075c/- with Rv2328/PE23

Normalized LFCs for Rv1075c/-:
(description and provenance of datasets)
Rv1075c/-Rv2328/PE23
Fe_supp_jason_reseq

0.058

1.225

low_pH_jason_reseq

-0.047

-1.477

NO_jason_reseq

0.37

-0.942

B6_jason_reseq

0.761

1.473

MHCII_jason_reseq

1.053

0.826

Isoniazid02

0.223

-0.109

Rifampicin4

0.655

-0.203

Ethambutol3

0.72

0.146

Meropenem3

-0.019

-0.199

Vancomycin16

-0.013

0.027

Rv2680_day32

0.547

-0.571

H37Rv_KO_MarP

-0.272

1.106

hypoxia_3wks

0.0

-0.582

hypoxia_6wks

-0.027

0.24

glycerol

0.059

-0.209

cholesterol

0.005

-0.44

AJ

0.708

0.395

Bibs02

0.579

0.227

Bibs02c

0.621

0.133

BL6

0.098

-1.094

BL6a

0.168

-0.634

BXD01

-0.325

-1.325

BXD010

-0.301

-0.856

BXD011

0.236

-0.615

BXD03

-0.578

-1.361

BXD04

-0.563

-0.639

BXD05

0.092

-0.294

BXD06

-0.313

-1.069

BXD07

-0.532

-0.894

BXD08

-0.402

-1.114

BXD09

-0.432

-0.688

CAST

0.042

-0.302

CCcont

-0.414

-1.439

DS01

0.217

0.741

DS02

0.244

0.78

DS04

0.443

-0.174

DS0c

0.475

0.662

GP01

-1.729

-1.656

GP02

-0.263

-1.829

GP0c

-0.827

-1.536

NOD

-0.129

-0.526

NZO

-0.441

-0.101

PWK

0.166

-0.033

H37Rv_KO_CtpC

-0.547

-0.952

H37Rv_KO_CtpD

-1.338

-2.587

H37Rv_KO_Rv1272

-0.365

-1.596

H37Rv_KO_SugABC

-0.751

-1.074

H37Rv_KO_MbtN

0.507

0.912

Trans05

0.398

-1.001

macrophage_unactivated

0.455

-0.748

IL1

-0.018

-0.919

Rapamycin

-0.107

-1.43

Tcell

-0.316

-1.427

GMCSF

-0.016

-0.657

IFNab

0.018

-0.278

IFNg

-0.259

-1.318

IFNg_GMCSF1

0.198

0.905

Rv1432_day32

-0.669

-1.593

Rv1565c_day32

-0.333

-0.333

secA2_input

0.817

0.672

delta_Rv3594

1.462

0.252

delta_Rv3717

1.354

0.843

delta_Rv3811

1.286

0.593

delta_Rv0954

1.035

0.163

PonA1

0.925

1.18

EccD1_KO

0.497

-0.641

EspI_KO

-0.288

0.396

PE35_KO

-0.158

0.356

PPE68_KO

0.275

-0.691

glycerol2

-0.352

0.094

lignocerate

-0.084

0.442

oleate

0.16

-0.286

phosphatidylcholine

-0.097

0.048

acetate

-0.351

0.914

glucAc

-0.716

0.592

Rv0950ko

-0.286

0.938

Rv1096ko

0.024

-0.718

Rv3684ko

-0.026

0.563

delta_otsA_trehalose

-1.218

-0.449