Top 10 genes with highest correlation to Rv1060/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0557/mgtA | (cc=0.4357) | info on Rv0557/mgtA |
| Rv2976c/ung | (cc=0.4334) | info on Rv2976c/ung |
| Rv0746/PE_PGRS9 | (cc=0.4057) | info on Rv0746/PE_PGRS9 |
| Rv1354c/- | (cc=0.4036) | info on Rv1354c/- |
| Rv2780/ald | (cc=0.3995) | info on Rv2780/ald |
| Rv2840c/- | (cc=0.3934) | info on Rv2840c/- |
| Rv3069/- | (cc=0.393) | info on Rv3069/- |
| Rv1506c/- | (cc=0.3714) | info on Rv1506c/- |
| Rv2581c/- | (cc=0.3639) | info on Rv2581c/- |
| Rv2041c/- | (cc=0.3618) | info on Rv2041c/- |
Correlation of Rv1060/- with Rv3069/-
Normalized LFCs for Rv1060/-:
(description and provenance of datasets)
| Rv1060/- | Rv3069/- | |
| Fe_supp_jason_reseq | -1.088 | -1.525 |
| low_pH_jason_reseq | 3.369 | 1.111 |
| NO_jason_reseq | 1.615 | 1.297 |
| B6_jason_reseq | 0.798 | 0.619 |
| MHCII_jason_reseq | 2.002 | 1.495 |
| Isoniazid02 | -0.34 | -1.008 |
| Rifampicin4 | 0.374 | -0.252 |
| Ethambutol3 | -0.32 | -0.755 |
| Meropenem3 | -0.883 | -0.182 |
| Vancomycin16 | 0.0 | -0.621 |
| Rv2680_day32 | -1.108 | -0.51 |
| H37Rv_KO_MarP | 1.476 | 0.192 |
| hypoxia_3wks | -0.359 | -0.072 |
| hypoxia_6wks | -0.161 | 0.177 |
| glycerol | 0.0 | 0.285 |
| cholesterol | 0.17 | -0.383 |
| AJ | 1.059 | 0.419 |
| Bibs02 | 0.408 | 0.0 |
| Bibs02c | 1.972 | 0.13 |
| BL6 | -0.114 | -0.323 |
| BL6a | 0.936 | -0.181 |
| BXD01 | 1.132 | -0.851 |
| BXD010 | 0.635 | -1.639 |
| BXD011 | 0.0 | -0.678 |
| BXD03 | -0.123 | -1.268 |
| BXD04 | 1.159 | -1.815 |
| BXD05 | -0.942 | -1.323 |
| BXD06 | 0.426 | -0.494 |
| BXD07 | 0.517 | -0.737 |
| BXD08 | 0.955 | -1.247 |
| BXD09 | 0.212 | -1.018 |
| CAST | 0.0 | 0.073 |
| CCcont | -0.4 | -1.539 |
| DS01 | 0.171 | -0.01 |
| DS02 | 0.529 | 0.2 |
| DS04 | 0.689 | 0.129 |
| DS0c | -0.878 | 0.416 |
| GP01 | 1.714 | 1.214 |
| GP02 | -0.562 | 1.65 |
| GP0c | 1.158 | 0.68 |
| NOD | 1.113 | -0.76 |
| NZO | -0.566 | 0.036 |
| PWK | -0.944 | 0.063 |
| H37Rv_KO_CtpC | -0.105 | -0.248 |
| H37Rv_KO_CtpD | -0.918 | -2.98 |
| H37Rv_KO_Rv1272 | -0.333 | -0.39 |
| H37Rv_KO_SugABC | -1.716 | -1.097 |
| H37Rv_KO_MbtN | 0.281 | -1.025 |
| Trans05 | -0.764 | 0.152 |
| macrophage_unactivated | 3.248 | 1.297 |
| IL1 | 0.086 | 1.536 |
| Rapamycin | -0.092 | 0.865 |
| Tcell | 3.161 | 1.87 |
| GMCSF | -0.24 | 0.449 |
| IFNab | -0.777 | 0.729 |
| IFNg | -0.16 | 0.171 |
| IFNg_GMCSF1 | 1.929 | 2.262 |
| Rv1432_day32 | 0.0 | 0.249 |
| Rv1565c_day32 | -3.244 | 1.652 |
| secA2_input | -2.918 | -1.565 |
| delta_Rv3594 | -0.159 | -0.968 |
| delta_Rv3717 | -1.651 | -0.396 |
| delta_Rv3811 | -1.056 | 0.079 |
| delta_Rv0954 | -1.398 | 0.738 |
| PonA1 | 0.945 | 0.299 |
| EccD1_KO | 1.957 | 1.799 |
| EspI_KO | 1.397 | 1.517 |
| PE35_KO | 0.583 | 2.252 |
| PPE68_KO | 1.84 | 1.987 |
| glycerol2 | -0.202 | 0.025 |
| lignocerate | -1.333 | -0.565 |
| oleate | 0.079 | 0.496 |
| phosphatidylcholine | -0.167 | 0.013 |
| acetate | -1.514 | -1.275 |
| glucAc | -2.744 | -1.298 |
| Rv0950ko | -0.591 | -0.274 |
| Rv1096ko | -0.383 | 0.872 |
| Rv3684ko | 1.893 | -1.618 |
| delta_otsA_trehalose | 1.069 | -0.087 |