Top 10 genes with highest correlation to Rv1054/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2683/- | (cc=0.4977) | info on Rv2683/- |
| Rv1663/pks17 | (cc=0.4787) | info on Rv1663/pks17 |
| Rv2668/- | (cc=0.4676) | info on Rv2668/- |
| Rv0293c/- | (cc=0.4596) | info on Rv0293c/- |
| Rv3123/- | (cc=0.4581) | info on Rv3123/- |
| Rv2287/yjcE | (cc=0.4517) | info on Rv2287/yjcE |
| Rv2444c/rne | (cc=0.4454) | info on Rv2444c/rne |
| Rv1472/echA12 | (cc=0.4312) | info on Rv1472/echA12 |
| Rv1913/- | (cc=0.4306) | info on Rv1913/- |
| Rv1100/- | (cc=0.4293) | info on Rv1100/- |
Correlation of Rv1054/- with Rv2683/-
Normalized LFCs for Rv1054/-:
(description and provenance of datasets)
| Rv1054/- | Rv2683/- | |
| Fe_supp_jason_reseq | -1.787 | 0.644 |
| low_pH_jason_reseq | 0.564 | 1.859 |
| NO_jason_reseq | 0.36 | 0.184 |
| B6_jason_reseq | -0.332 | 1.008 |
| MHCII_jason_reseq | 0.317 | -0.926 |
| Isoniazid02 | 0.0 | 0.076 |
| Rifampicin4 | 0.606 | -0.092 |
| Ethambutol3 | -0.043 | 0.063 |
| Meropenem3 | 2.658 | 1.222 |
| Vancomycin16 | 0.432 | 0.255 |
| Rv2680_day32 | 0.511 | 0.618 |
| H37Rv_KO_MarP | -0.341 | -0.49 |
| hypoxia_3wks | -0.327 | -1.655 |
| hypoxia_6wks | -0.86 | -0.733 |
| glycerol | 0.357 | -0.688 |
| cholesterol | 0.205 | -0.305 |
| AJ | -0.234 | -1.309 |
| Bibs02 | 0.168 | -0.6 |
| Bibs02c | -0.309 | -0.74 |
| BL6 | 0.292 | 0.381 |
| BL6a | 0.231 | 0.55 |
| BXD01 | 1.337 | 1.41 |
| BXD010 | 1.139 | 1.21 |
| BXD011 | 0.999 | 1.792 |
| BXD03 | 1.234 | 1.022 |
| BXD04 | 0.97 | 1.699 |
| BXD05 | 1.03 | 1.385 |
| BXD06 | 1.18 | 1.319 |
| BXD07 | 1.84 | 1.064 |
| BXD08 | 0.476 | 1.166 |
| BXD09 | 1.6 | 1.447 |
| CAST | -0.34 | -0.265 |
| CCcont | 0.444 | 0.582 |
| DS01 | 1.001 | -1.088 |
| DS02 | 0.531 | -0.206 |
| DS04 | 1.691 | -0.409 |
| DS0c | -0.536 | -2.23 |
| GP01 | -1.031 | -1.143 |
| GP02 | -0.9 | -0.243 |
| GP0c | 0.136 | -1.159 |
| NOD | -0.478 | -0.236 |
| NZO | -1.391 | 0.675 |
| PWK | 0.08 | -0.877 |
| H37Rv_KO_CtpC | -0.24 | 0.298 |
| H37Rv_KO_CtpD | -1.275 | 0.834 |
| H37Rv_KO_Rv1272 | 0.698 | 0.362 |
| H37Rv_KO_SugABC | 1.566 | 0.458 |
| H37Rv_KO_MbtN | -0.691 | -0.775 |
| Trans05 | 0.104 | 0.416 |
| macrophage_unactivated | -0.644 | -0.423 |
| IL1 | -1.75 | -0.964 |
| Rapamycin | -1.381 | -0.865 |
| Tcell | 2.154 | 1.02 |
| GMCSF | -0.692 | -1.138 |
| IFNab | -2.092 | -0.562 |
| IFNg | -1.221 | -1.069 |
| IFNg_GMCSF1 | -1.628 | -1.712 |
| Rv1432_day32 | -0.387 | -0.953 |
| Rv1565c_day32 | 1.106 | 0.096 |
| secA2_input | -1.199 | -0.647 |
| delta_Rv3594 | -1.4 | -0.569 |
| delta_Rv3717 | -1.343 | -0.356 |
| delta_Rv3811 | -1.728 | -0.824 |
| delta_Rv0954 | -0.072 | -0.366 |
| PonA1 | 0.351 | -0.806 |
| EccD1_KO | 1.973 | -0.112 |
| EspI_KO | 0.374 | -0.228 |
| PE35_KO | -0.884 | 0.875 |
| PPE68_KO | -1.613 | 0.374 |
| glycerol2 | -0.958 | -0.981 |
| lignocerate | -0.581 | -0.647 |
| oleate | 0.699 | 0.393 |
| phosphatidylcholine | -0.221 | -0.161 |
| acetate | -0.58 | -0.294 |
| glucAc | -1.394 | -1.034 |
| Rv0950ko | -1.149 | -0.223 |
| Rv1096ko | -0.464 | -0.712 |
| Rv3684ko | -0.557 | 1.683 |
| delta_otsA_trehalose | 1.386 | 0.183 |