Top 10 genes with highest correlation to Rv1010/ksgA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3193c/- | (cc=0.7255) | info on Rv3193c/- |
| Rv2169c/- | (cc=0.6961) | info on Rv2169c/- |
| Rv2909c/rpsP | (cc=0.6744) | info on Rv2909c/rpsP |
| Rv2535c/pepQ | (cc=0.6603) | info on Rv2535c/pepQ |
| Rv0003/recF | (cc=0.6505) | info on Rv0003/recF |
| Rv1638/uvrA | (cc=0.6491) | info on Rv1638/uvrA |
| Rv2518c/ldtB | (cc=0.6422) | info on Rv2518c/ldtB |
| Rv3228/- | (cc=0.6348) | info on Rv3228/- |
| Rv2342/- | (cc=0.6119) | info on Rv2342/- |
| Rv2737c/recA | (cc=0.6051) | info on Rv2737c/recA |
Correlation of Rv1010/ksgA with Rv1638/uvrA
Normalized LFCs for Rv1010/ksgA:
(description and provenance of datasets)
| Rv1010/ksgA | Rv1638/uvrA | |
| Fe_supp_jason_reseq | 1.796 | 2.005 |
| low_pH_jason_reseq | 0.0 | -0.842 |
| NO_jason_reseq | 0.362 | -0.874 |
| B6_jason_reseq | 0.0 | -1.019 |
| MHCII_jason_reseq | 0.0 | -1.251 |
| Isoniazid02 | -0.885 | -0.061 |
| Rifampicin4 | -2.708 | -1.11 |
| Ethambutol3 | 2.486 | 0.542 |
| Meropenem3 | -0.497 | -0.628 |
| Vancomycin16 | 0.95 | -0.764 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | 2.654 | -0.563 |
| hypoxia_3wks | -1.388 | -1.204 |
| hypoxia_6wks | -0.727 | -1.817 |
| glycerol | 0.992 | 1.654 |
| cholesterol | 1.558 | 0.773 |
| AJ | 0.0 | -0.242 |
| Bibs02 | 0.0 | -0.294 |
| Bibs02c | 0.399 | 0.382 |
| BL6 | 0.125 | 0.63 |
| BL6a | 0.198 | 0.997 |
| BXD01 | 0.13 | 0.486 |
| BXD010 | 0.0 | -0.206 |
| BXD011 | 0.243 | 0.475 |
| BXD03 | 0.573 | 0.189 |
| BXD04 | 0.124 | 0.372 |
| BXD05 | 0.135 | 0.3 |
| BXD06 | 0.469 | 0.498 |
| BXD07 | 0.264 | 0.194 |
| BXD08 | 0.253 | 0.297 |
| BXD09 | 0.14 | 0.572 |
| CAST | 0.0 | -0.809 |
| CCcont | 2.822 | 2.708 |
| DS01 | 0.236 | -0.12 |
| DS02 | 0.0 | 0.0 |
| DS04 | 0.194 | 0.094 |
| DS0c | 0.217 | 0.652 |
| GP01 | 0.0 | -0.28 |
| GP02 | 0.0 | 0.339 |
| GP0c | 0.0 | 0.942 |
| NOD | 0.0 | -1.126 |
| NZO | 0.0 | -0.701 |
| PWK | 0.0 | -0.433 |
| H37Rv_KO_CtpC | 0.162 | 1.331 |
| H37Rv_KO_CtpD | 0.445 | 0.558 |
| H37Rv_KO_Rv1272 | 0.387 | 0.71 |
| H37Rv_KO_SugABC | 0.55 | 1.472 |
| H37Rv_KO_MbtN | 0.747 | 1.713 |
| Trans05 | 0.249 | 0.344 |
| macrophage_unactivated | 0.83 | 1.382 |
| IL1 | 0.409 | -0.436 |
| Rapamycin | 0.0 | -0.295 |
| Tcell | 0.857 | 0.0 |
| GMCSF | 0.0 | -0.671 |
| IFNab | 0.417 | 0.771 |
| IFNg | 0.369 | -0.679 |
| IFNg_GMCSF1 | 0.0 | -0.625 |
| Rv1432_day32 | -0.18 | -1.562 |
| Rv1565c_day32 | 0.199 | -0.269 |
| secA2_input | -0.611 | 0.783 |
| delta_Rv3594 | -0.096 | 0.39 |
| delta_Rv3717 | -0.763 | -0.415 |
| delta_Rv3811 | -0.596 | 0.095 |
| delta_Rv0954 | -0.226 | 0.499 |
| PonA1 | 0.509 | -0.504 |
| EccD1_KO | -0.329 | 0.329 |
| EspI_KO | 0.633 | -0.128 |
| PE35_KO | 2.234 | 0.817 |
| PPE68_KO | 1.661 | 1.161 |
| glycerol2 | -2.36 | -1.562 |
| lignocerate | -2.642 | -1.816 |
| oleate | -2.704 | -1.904 |
| phosphatidylcholine | -2.846 | -2.088 |
| acetate | -0.818 | -0.143 |
| glucAc | -0.462 | 0.356 |
| Rv0950ko | -0.458 | -0.302 |
| Rv1096ko | -0.362 | -0.663 |
| Rv3684ko | -0.937 | -0.72 |
| delta_otsA_trehalose | 0.126 | 0.081 |