Top 10 genes with highest correlation to Rv1006/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2363/amiA2 | (cc=0.8719) | info on Rv2363/amiA2 |
| Rv1566c/- | (cc=0.7361) | info on Rv1566c/- |
| Rv1860/apa | (cc=0.7287) | info on Rv1860/apa |
| Rv2869c/rip | (cc=0.6767) | info on Rv2869c/rip |
| Rv0436c/pssA | (cc=0.6749) | info on Rv0436c/pssA |
| Rv3207c/- | (cc=0.6584) | info on Rv3207c/- |
| Rv2170/- | (cc=0.6425) | info on Rv2170/- |
| Rv0999/- | (cc=0.6377) | info on Rv0999/- |
| Rv3810/pirG | (cc=0.629) | info on Rv3810/pirG |
| Rv2700/- | (cc=0.6234) | info on Rv2700/- |
Correlation of Rv1006/- with Rv3810/pirG
Normalized LFCs for Rv1006/-:
(description and provenance of datasets)
| Rv1006/- | Rv3810/pirG | |
| Fe_supp_jason_reseq | 2.892 | 0.253 |
| low_pH_jason_reseq | 0.596 | -0.842 |
| NO_jason_reseq | -0.845 | -1.32 |
| B6_jason_reseq | -0.357 | -0.85 |
| MHCII_jason_reseq | 1.742 | -0.614 |
| Isoniazid02 | 0.071 | 0.469 |
| Rifampicin4 | -5.058 | -4.703 |
| Ethambutol3 | 0.766 | -1.131 |
| Meropenem3 | -1.508 | -0.386 |
| Vancomycin16 | -3.404 | -4.019 |
| Rv2680_day32 | -0.793 | -0.947 |
| H37Rv_KO_MarP | -2.348 | -0.734 |
| hypoxia_3wks | -0.574 | -4.175 |
| hypoxia_6wks | -1.84 | -2.859 |
| glycerol | 1.005 | 1.147 |
| cholesterol | 0.957 | 1.797 |
| AJ | -0.551 | -0.983 |
| Bibs02 | 0.828 | 0.976 |
| Bibs02c | 1.343 | 0.805 |
| BL6 | 0.462 | -0.768 |
| BL6a | 0.943 | -1.019 |
| BXD01 | 0.497 | -0.67 |
| BXD010 | -0.169 | -0.787 |
| BXD011 | -0.093 | -0.782 |
| BXD03 | 0.115 | -0.573 |
| BXD04 | 0.202 | -0.236 |
| BXD05 | -0.233 | -0.827 |
| BXD06 | -0.508 | -0.687 |
| BXD07 | -0.101 | -0.851 |
| BXD08 | 0.135 | -0.817 |
| BXD09 | 0.119 | -0.863 |
| CAST | -1.473 | -0.782 |
| CCcont | 1.936 | 1.43 |
| DS01 | 0.491 | 0.133 |
| DS02 | 0.775 | 0.922 |
| DS04 | 0.197 | 1.405 |
| DS0c | 1.328 | 0.239 |
| GP01 | -0.054 | 1.26 |
| GP02 | -0.712 | -0.353 |
| GP0c | -0.598 | 0.446 |
| NOD | -1.095 | -0.763 |
| NZO | -0.345 | -1.225 |
| PWK | -1.191 | -1.205 |
| H37Rv_KO_CtpC | 1.233 | 0.341 |
| H37Rv_KO_CtpD | 1.748 | 0.072 |
| H37Rv_KO_Rv1272 | 0.273 | -0.598 |
| H37Rv_KO_SugABC | 0.525 | 1.297 |
| H37Rv_KO_MbtN | 0.455 | -0.271 |
| Trans05 | -0.254 | -0.161 |
| macrophage_unactivated | 1.793 | 0.0 |
| IL1 | -0.154 | -0.374 |
| Rapamycin | 1.114 | -0.387 |
| Tcell | 0.166 | -0.411 |
| GMCSF | 0.626 | -0.694 |
| IFNab | 0.444 | 0.0 |
| IFNg | 0.0 | -0.337 |
| IFNg_GMCSF1 | 0.314 | 0.0 |
| Rv1432_day32 | 0.228 | 0.314 |
| Rv1565c_day32 | 0.734 | -0.325 |
| secA2_input | -0.207 | -1.154 |
| delta_Rv3594 | 1.345 | 2.674 |
| delta_Rv3717 | 0.19 | 1.805 |
| delta_Rv3811 | 0.953 | 2.589 |
| delta_Rv0954 | 1.578 | -0.057 |
| PonA1 | 0.646 | -0.269 |
| EccD1_KO | -0.908 | -1.365 |
| EspI_KO | -0.445 | -0.046 |
| PE35_KO | -0.738 | 1.356 |
| PPE68_KO | 0.182 | -0.31 |
| glycerol2 | -0.553 | -1.063 |
| lignocerate | 0.308 | -1.064 |
| oleate | 0.0 | -1.613 |
| phosphatidylcholine | -0.021 | -1.594 |
| acetate | 0.025 | -0.763 |
| glucAc | -0.269 | -0.3 |
| Rv0950ko | -2.439 | -2.406 |
| Rv1096ko | -1.384 | -0.036 |
| Rv3684ko | -0.229 | 0.416 |
| delta_otsA_trehalose | -0.348 | -2.168 |