Top 10 genes with highest correlation to Rv1000c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2345/- | (cc=0.6093) | info on Rv2345/- |
| Rv1899c/lppD | (cc=0.4895) | info on Rv1899c/lppD |
| Rv1545/- | (cc=0.4869) | info on Rv1545/- |
| Rv1857/modA | (cc=0.4858) | info on Rv1857/modA |
| Rv1947/- | (cc=0.4746) | info on Rv1947/- |
| Rv1726/- | (cc=0.4718) | info on Rv1726/- |
| Rv0605/- | (cc=0.4686) | info on Rv0605/- |
| Rv0399c/lpqK | (cc=0.4606) | info on Rv0399c/lpqK |
| Rv1141c/echA11 | (cc=0.4537) | info on Rv1141c/echA11 |
| Rv2658c/- | (cc=0.4466) | info on Rv2658c/- |
Correlation of Rv1000c/- with Rv1899c/lppD
Normalized LFCs for Rv1000c/-:
(description and provenance of datasets)
| Rv1000c/- | Rv1899c/lppD | |
| Fe_supp_jason_reseq | -1.361 | -0.295 |
| low_pH_jason_reseq | -2.546 | -0.371 |
| NO_jason_reseq | -0.197 | 0.121 |
| B6_jason_reseq | -0.576 | -0.499 |
| MHCII_jason_reseq | -0.576 | 0.088 |
| Isoniazid02 | -1.963 | -1.49 |
| Rifampicin4 | 0.384 | -0.279 |
| Ethambutol3 | -1.688 | -0.8 |
| Meropenem3 | -1.517 | -1.127 |
| Vancomycin16 | -0.584 | -0.809 |
| Rv2680_day32 | -1.602 | 0.228 |
| H37Rv_KO_MarP | 0.138 | -0.21 |
| hypoxia_3wks | 0.06 | -0.096 |
| hypoxia_6wks | 0.566 | 0.096 |
| glycerol | 0.127 | 0.654 |
| cholesterol | 0.507 | 0.101 |
| AJ | 0.45 | -0.079 |
| Bibs02 | -0.091 | -0.383 |
| Bibs02c | 0.073 | -0.018 |
| BL6 | 0.353 | -0.426 |
| BL6a | -0.324 | -0.211 |
| BXD01 | -0.594 | -0.079 |
| BXD010 | 0.196 | -0.185 |
| BXD011 | 0.672 | -0.209 |
| BXD03 | 0.287 | -0.542 |
| BXD04 | -0.76 | -0.191 |
| BXD05 | -0.145 | -0.046 |
| BXD06 | -0.125 | -0.401 |
| BXD07 | 0.244 | -0.276 |
| BXD08 | -0.345 | -0.167 |
| BXD09 | -0.379 | -0.331 |
| CAST | -0.229 | 0.24 |
| CCcont | -0.888 | -0.449 |
| DS01 | 0.542 | 0.173 |
| DS02 | 0.569 | -0.455 |
| DS04 | 0.52 | 0.358 |
| DS0c | 0.608 | -0.055 |
| GP01 | 0.172 | 0.594 |
| GP02 | 0.497 | 0.124 |
| GP0c | -0.196 | 0.425 |
| NOD | 0.477 | -0.218 |
| NZO | 0.458 | -0.448 |
| PWK | -0.345 | -0.59 |
| H37Rv_KO_CtpC | 0.211 | 0.703 |
| H37Rv_KO_CtpD | 0.678 | 0.221 |
| H37Rv_KO_Rv1272 | -0.644 | 0.629 |
| H37Rv_KO_SugABC | 1.463 | 0.582 |
| H37Rv_KO_MbtN | 0.647 | 0.818 |
| Trans05 | -0.157 | 0.614 |
| macrophage_unactivated | -0.199 | 0.846 |
| IL1 | 0.789 | 1.51 |
| Rapamycin | 0.657 | -0.068 |
| Tcell | 0.235 | 0.094 |
| GMCSF | 1.751 | 0.61 |
| IFNab | 0.323 | 0.463 |
| IFNg | 1.475 | 0.019 |
| IFNg_GMCSF1 | 1.335 | 0.314 |
| Rv1432_day32 | 1.551 | 0.284 |
| Rv1565c_day32 | 0.607 | 0.638 |
| secA2_input | -1.032 | -0.091 |
| delta_Rv3594 | -0.413 | 0.185 |
| delta_Rv3717 | -0.417 | -0.174 |
| delta_Rv3811 | -0.587 | 0.015 |
| delta_Rv0954 | -0.115 | -0.406 |
| PonA1 | -0.262 | 0.495 |
| EccD1_KO | 1.447 | 0.865 |
| EspI_KO | 1.805 | 0.145 |
| PE35_KO | 0.732 | 0.738 |
| PPE68_KO | 1.113 | 0.825 |
| glycerol2 | -0.147 | -0.014 |
| lignocerate | -0.136 | -0.128 |
| oleate | 0.405 | 0.295 |
| phosphatidylcholine | 0.21 | 0.157 |
| acetate | -0.82 | -0.103 |
| glucAc | -0.624 | -0.075 |
| Rv0950ko | 0.22 | 0.066 |
| Rv1096ko | 0.715 | -0.377 |
| Rv3684ko | -0.639 | -0.072 |
| delta_otsA_trehalose | -0.104 | 0.975 |