Top 10 genes with highest correlation to Rv1000c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2345/- | (cc=0.6093) | info on Rv2345/- |
| Rv1899c/lppD | (cc=0.4895) | info on Rv1899c/lppD |
| Rv1545/- | (cc=0.4869) | info on Rv1545/- |
| Rv1857/modA | (cc=0.4858) | info on Rv1857/modA |
| Rv1947/- | (cc=0.4746) | info on Rv1947/- |
| Rv1726/- | (cc=0.4718) | info on Rv1726/- |
| Rv0605/- | (cc=0.4686) | info on Rv0605/- |
| Rv0399c/lpqK | (cc=0.4606) | info on Rv0399c/lpqK |
| Rv1141c/echA11 | (cc=0.4537) | info on Rv1141c/echA11 |
| Rv2658c/- | (cc=0.4466) | info on Rv2658c/- |
Correlation of Rv1000c/- with Rv1545/-
Normalized LFCs for Rv1000c/-:
(description and provenance of datasets)
| Rv1000c/- | Rv1545/- | |
| Fe_supp_jason_reseq | -1.361 | -0.769 |
| low_pH_jason_reseq | -2.546 | -0.746 |
| NO_jason_reseq | -0.197 | 0.11 |
| B6_jason_reseq | -0.576 | -0.858 |
| MHCII_jason_reseq | -0.576 | -1.901 |
| Isoniazid02 | -1.963 | -1.705 |
| Rifampicin4 | 0.384 | -0.409 |
| Ethambutol3 | -1.688 | -1.961 |
| Meropenem3 | -1.517 | -1.899 |
| Vancomycin16 | -0.584 | -0.708 |
| Rv2680_day32 | -1.602 | -0.276 |
| H37Rv_KO_MarP | 0.138 | -0.135 |
| hypoxia_3wks | 0.06 | -0.088 |
| hypoxia_6wks | 0.566 | -0.725 |
| glycerol | 0.127 | 0.97 |
| cholesterol | 0.507 | 0.371 |
| AJ | 0.45 | -0.324 |
| Bibs02 | -0.091 | 0.201 |
| Bibs02c | 0.073 | -0.59 |
| BL6 | 0.353 | 0.306 |
| BL6a | -0.324 | -0.244 |
| BXD01 | -0.594 | -0.058 |
| BXD010 | 0.196 | 0.328 |
| BXD011 | 0.672 | 0.333 |
| BXD03 | 0.287 | -0.68 |
| BXD04 | -0.76 | -1.393 |
| BXD05 | -0.145 | 0.852 |
| BXD06 | -0.125 | -0.928 |
| BXD07 | 0.244 | -0.39 |
| BXD08 | -0.345 | -1.24 |
| BXD09 | -0.379 | -0.343 |
| CAST | -0.229 | 1.366 |
| CCcont | -0.888 | -0.011 |
| DS01 | 0.542 | 0.943 |
| DS02 | 0.569 | -0.739 |
| DS04 | 0.52 | 1.377 |
| DS0c | 0.608 | 0.506 |
| GP01 | 0.172 | -0.188 |
| GP02 | 0.497 | -0.806 |
| GP0c | -0.196 | 1.791 |
| NOD | 0.477 | -0.277 |
| NZO | 0.458 | 0.855 |
| PWK | -0.345 | 0.388 |
| H37Rv_KO_CtpC | 0.211 | 0.688 |
| H37Rv_KO_CtpD | 0.678 | 0.95 |
| H37Rv_KO_Rv1272 | -0.644 | 1.177 |
| H37Rv_KO_SugABC | 1.463 | 0.304 |
| H37Rv_KO_MbtN | 0.647 | 0.376 |
| Trans05 | -0.157 | 1.248 |
| macrophage_unactivated | -0.199 | -1.566 |
| IL1 | 0.789 | -0.338 |
| Rapamycin | 0.657 | 0.933 |
| Tcell | 0.235 | 0.231 |
| GMCSF | 1.751 | 1.362 |
| IFNab | 0.323 | -0.85 |
| IFNg | 1.475 | 0.567 |
| IFNg_GMCSF1 | 1.335 | -0.452 |
| Rv1432_day32 | 1.551 | 1.123 |
| Rv1565c_day32 | 0.607 | 1.283 |
| secA2_input | -1.032 | 0.96 |
| delta_Rv3594 | -0.413 | -0.783 |
| delta_Rv3717 | -0.417 | -0.512 |
| delta_Rv3811 | -0.587 | -1.755 |
| delta_Rv0954 | -0.115 | 0.337 |
| PonA1 | -0.262 | -1.154 |
| EccD1_KO | 1.447 | 1.089 |
| EspI_KO | 1.805 | 1.166 |
| PE35_KO | 0.732 | 1.175 |
| PPE68_KO | 1.113 | 1.235 |
| glycerol2 | -0.147 | -0.454 |
| lignocerate | -0.136 | -0.408 |
| oleate | 0.405 | 0.213 |
| phosphatidylcholine | 0.21 | -0.207 |
| acetate | -0.82 | 0.128 |
| glucAc | -0.624 | 0.418 |
| Rv0950ko | 0.22 | 2.168 |
| Rv1096ko | 0.715 | 2.597 |
| Rv3684ko | -0.639 | 1.189 |
| delta_otsA_trehalose | -0.104 | -0.515 |