Top 10 genes with highest correlation to Rv0960/vapC9:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1809/PPE33 | (cc=0.5268) | info on Rv1809/PPE33 |
| Rv3238c/- | (cc=0.4467) | info on Rv3238c/- |
| Rv1591/- | (cc=0.4419) | info on Rv1591/- |
| Rv2590/fadD9 | (cc=0.4385) | info on Rv2590/fadD9 |
| Rv3235/- | (cc=0.427) | info on Rv3235/- |
| Rv0915c/PPE14 | (cc=0.4136) | info on Rv0915c/PPE14 |
| Rv2557/- | (cc=0.4125) | info on Rv2557/- |
| Rv2024c/- | (cc=0.4118) | info on Rv2024c/- |
| Rv3736/- | (cc=0.4084) | info on Rv3736/- |
| Rv3290c/lat | (cc=0.3999) | info on Rv3290c/lat |
Correlation of Rv0960/vapC9 with Rv3235/-
Normalized LFCs for Rv0960/vapC9:
(description and provenance of datasets)
| Rv0960/vapC9 | Rv3235/- | |
| Fe_supp_jason_reseq | -1.844 | -2.433 |
| low_pH_jason_reseq | -0.457 | -1.323 |
| NO_jason_reseq | -0.362 | -1.25 |
| B6_jason_reseq | -1.349 | -1.305 |
| MHCII_jason_reseq | -0.342 | -0.674 |
| Isoniazid02 | 0.031 | -0.317 |
| Rifampicin4 | 0.95 | 0.994 |
| Ethambutol3 | 0.303 | -0.101 |
| Meropenem3 | 1.523 | -0.066 |
| Vancomycin16 | 0.135 | 0.034 |
| Rv2680_day32 | -0.052 | 1.05 |
| H37Rv_KO_MarP | 0.395 | 0.586 |
| hypoxia_3wks | -0.49 | -1.531 |
| hypoxia_6wks | -0.376 | -0.509 |
| glycerol | -0.761 | 0.629 |
| cholesterol | 0.029 | 0.44 |
| AJ | 0.592 | -0.748 |
| Bibs02 | 1.091 | 0.735 |
| Bibs02c | -0.058 | -0.068 |
| BL6 | -0.331 | -1.734 |
| BL6a | 0.04 | 0.201 |
| BXD01 | -0.224 | -0.162 |
| BXD010 | -0.189 | -1.012 |
| BXD011 | -0.79 | -1.873 |
| BXD03 | 0.843 | 0.935 |
| BXD04 | 0.776 | -1.191 |
| BXD05 | -0.646 | -0.918 |
| BXD06 | 0.156 | -1.285 |
| BXD07 | 0.074 | -0.406 |
| BXD08 | 0.139 | -1.556 |
| BXD09 | 0.232 | -1.018 |
| CAST | -0.609 | -0.232 |
| CCcont | -0.162 | -0.64 |
| DS01 | 0.498 | 0.601 |
| DS02 | 0.173 | 1.027 |
| DS04 | 0.627 | 0.916 |
| DS0c | 0.588 | -1.039 |
| GP01 | 0.83 | -0.054 |
| GP02 | 1.002 | 0.464 |
| GP0c | -0.045 | 0.907 |
| NOD | -0.278 | 0.0 |
| NZO | -1.74 | -1.058 |
| PWK | -0.818 | 0.611 |
| H37Rv_KO_CtpC | 0.033 | 0.034 |
| H37Rv_KO_CtpD | 0.554 | 0.177 |
| H37Rv_KO_Rv1272 | -0.451 | -0.336 |
| H37Rv_KO_SugABC | 1.658 | 0.54 |
| H37Rv_KO_MbtN | 1.095 | 0.414 |
| Trans05 | -0.467 | -1.866 |
| macrophage_unactivated | 0.455 | -0.189 |
| IL1 | 0.899 | 4.9 |
| Rapamycin | 0.663 | -0.577 |
| Tcell | 0.469 | 0.0 |
| GMCSF | 0.85 | 1.077 |
| IFNab | 0.683 | -0.886 |
| IFNg | -0.257 | -2.443 |
| IFNg_GMCSF1 | 1.612 | 1.486 |
| Rv1432_day32 | 0.489 | 0.0 |
| Rv1565c_day32 | -0.325 | 0.55 |
| secA2_input | -0.263 | -1.882 |
| delta_Rv3594 | -0.665 | 0.06 |
| delta_Rv3717 | 0.17 | 0.31 |
| delta_Rv3811 | -0.913 | -0.819 |
| delta_Rv0954 | -0.636 | 0.947 |
| PonA1 | 0.103 | -0.813 |
| EccD1_KO | 0.434 | -0.289 |
| EspI_KO | 0.961 | 0.322 |
| PE35_KO | 1.103 | 0.636 |
| PPE68_KO | 0.761 | 0.726 |
| glycerol2 | 0.993 | -0.796 |
| lignocerate | 0.477 | -0.24 |
| oleate | 0.978 | -0.481 |
| phosphatidylcholine | 0.767 | -0.445 |
| acetate | -0.452 | 0.82 |
| glucAc | -0.717 | 0.298 |
| Rv0950ko | 0.473 | 0.633 |
| Rv1096ko | 0.371 | 0.787 |
| Rv3684ko | 1.117 | 0.341 |
| delta_otsA_trehalose | 0.725 | -0.939 |