Top 10 genes with highest correlation to Rv0887c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3395c/- | (cc=0.7227) | info on Rv3395c/- |
| Rv0850/- | (cc=0.7014) | info on Rv0850/- |
| Rv2499c/- | (cc=0.7005) | info on Rv2499c/- |
| Rv1160/mutT2 | (cc=0.6959) | info on Rv1160/mutT2 |
| Rv3353c/- | (cc=0.6722) | info on Rv3353c/- |
| Rv1974/- | (cc=0.6699) | info on Rv1974/- |
| Rv2669/- | (cc=0.6663) | info on Rv2669/- |
| Rv2633c/- | (cc=0.6551) | info on Rv2633c/- |
| Rv1192/- | (cc=0.6546) | info on Rv1192/- |
| Rv2405/- | (cc=0.6525) | info on Rv2405/- |
Correlation of Rv0887c/- with Rv2669/-
Normalized LFCs for Rv0887c/-:
(description and provenance of datasets)
| Rv0887c/- | Rv2669/- | |
| Fe_supp_jason_reseq | 0.415 | -0.069 |
| low_pH_jason_reseq | -0.599 | -1.332 |
| NO_jason_reseq | 2.392 | -1.205 |
| B6_jason_reseq | 2.335 | 3.037 |
| MHCII_jason_reseq | 2.223 | 2.498 |
| Isoniazid02 | 0.304 | 0.706 |
| Rifampicin4 | 0.051 | 0.49 |
| Ethambutol3 | -0.381 | -0.122 |
| Meropenem3 | 0.781 | 0.0 |
| Vancomycin16 | 1.666 | 0.698 |
| Rv2680_day32 | -0.413 | -0.875 |
| H37Rv_KO_MarP | 0.0 | 2.138 |
| hypoxia_3wks | -1.475 | -0.961 |
| hypoxia_6wks | -0.382 | 0.309 |
| glycerol | 0.541 | 1.34 |
| cholesterol | 0.71 | 1.133 |
| AJ | 0.138 | -0.398 |
| Bibs02 | 0.0 | 0.126 |
| Bibs02c | 1.035 | 0.191 |
| BL6 | -0.935 | 0.227 |
| BL6a | 0.36 | -1.116 |
| BXD01 | -0.542 | -1.807 |
| BXD010 | -2.717 | -2.339 |
| BXD011 | -1.316 | -2.809 |
| BXD03 | -2.012 | -3.074 |
| BXD04 | -0.048 | -0.599 |
| BXD05 | -0.545 | -2.654 |
| BXD06 | -1.152 | -2.704 |
| BXD07 | -1.677 | -3.148 |
| BXD08 | -1.219 | -1.028 |
| BXD09 | -1.702 | -1.753 |
| CAST | 0.185 | -0.27 |
| CCcont | 0.183 | -1.547 |
| DS01 | 0.577 | 1.702 |
| DS02 | 1.712 | 1.15 |
| DS04 | 0.087 | 1.428 |
| DS0c | 1.684 | 0.506 |
| GP01 | -1.0 | -2.315 |
| GP02 | -1.673 | -0.686 |
| GP0c | -0.714 | -0.337 |
| NOD | -0.412 | 2.193 |
| NZO | -0.785 | 0.0 |
| PWK | 0.24 | -0.74 |
| H37Rv_KO_CtpC | 0.061 | -0.85 |
| H37Rv_KO_CtpD | -1.885 | -3.068 |
| H37Rv_KO_Rv1272 | -0.464 | -3.802 |
| H37Rv_KO_SugABC | 0.306 | 0.268 |
| H37Rv_KO_MbtN | -1.749 | -2.497 |
| Trans05 | -3.216 | -3.393 |
| macrophage_unactivated | -1.098 | -1.31 |
| IL1 | -0.572 | -3.921 |
| Rapamycin | -3.397 | -4.057 |
| Tcell | 0.401 | -1.678 |
| GMCSF | -0.668 | -1.497 |
| IFNab | -1.466 | -2.606 |
| IFNg | -2.673 | -4.049 |
| IFNg_GMCSF1 | -1.304 | -1.012 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.398 | 0.284 |
| secA2_input | -1.461 | 0.302 |
| delta_Rv3594 | 1.337 | 1.741 |
| delta_Rv3717 | 1.495 | 1.995 |
| delta_Rv3811 | 3.062 | 1.787 |
| delta_Rv0954 | 2.013 | -0.096 |
| PonA1 | 2.604 | 0.372 |
| EccD1_KO | -0.895 | -0.181 |
| EspI_KO | -0.776 | -1.708 |
| PE35_KO | 0.831 | 0.155 |
| PPE68_KO | -0.374 | -0.176 |
| glycerol2 | 2.844 | 1.014 |
| lignocerate | 3.288 | 0.216 |
| oleate | -0.179 | 0.366 |
| phosphatidylcholine | 2.962 | 0.667 |
| acetate | 3.586 | -0.336 |
| glucAc | 2.946 | 0.239 |
| Rv0950ko | 1.251 | 0.229 |
| Rv1096ko | 1.921 | 0.947 |
| Rv3684ko | 1.294 | 2.204 |
| delta_otsA_trehalose | -1.092 | 0.075 |