Top 10 genes with highest correlation to Rv0856/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1192/- | (cc=0.6024) | info on Rv1192/- |
| Rv3612c/- | (cc=0.5422) | info on Rv3612c/- |
| Rv0071/- | (cc=0.5323) | info on Rv0071/- |
| Rv3641c/fic | (cc=0.5232) | info on Rv3641c/fic |
| Rv1442/bisC | (cc=0.5172) | info on Rv1442/bisC |
| Rv2351c/plcA | (cc=0.5127) | info on Rv2351c/plcA |
| Rv0470A/- | (cc=0.4959) | info on Rv0470A/- |
| Rv3450c/eccB4 | (cc=0.4783) | info on Rv3450c/eccB4 |
| Rv1425/- | (cc=0.4773) | info on Rv1425/- |
| Rv2636/- | (cc=0.4731) | info on Rv2636/- |
Correlation of Rv0856/- with Rv2636/-
Normalized LFCs for Rv0856/-:
(description and provenance of datasets)
| Rv0856/- | Rv2636/- | |
| Fe_supp_jason_reseq | 0.164 | -0.073 |
| low_pH_jason_reseq | -1.101 | -0.942 |
| NO_jason_reseq | 0.36 | 0.071 |
| B6_jason_reseq | 1.293 | 1.243 |
| MHCII_jason_reseq | 1.294 | 1.783 |
| Isoniazid02 | 0.143 | -0.55 |
| Rifampicin4 | 0.125 | 0.162 |
| Ethambutol3 | 0.308 | 0.417 |
| Meropenem3 | 1.494 | -1.06 |
| Vancomycin16 | 0.292 | -0.642 |
| Rv2680_day32 | 1.563 | 1.092 |
| H37Rv_KO_MarP | 0.078 | 0.013 |
| hypoxia_3wks | -0.706 | 0.056 |
| hypoxia_6wks | -0.37 | -0.186 |
| glycerol | -0.892 | 0.263 |
| cholesterol | 0.109 | 0.048 |
| AJ | 0.35 | 0.345 |
| Bibs02 | 0.24 | 0.177 |
| Bibs02c | 0.333 | 0.358 |
| BL6 | -1.052 | -0.987 |
| BL6a | -0.26 | -0.442 |
| BXD01 | -0.519 | -1.222 |
| BXD010 | -1.783 | -0.989 |
| BXD011 | 1.228 | -1.507 |
| BXD03 | 0.372 | -1.037 |
| BXD04 | -0.291 | -1.588 |
| BXD05 | -0.137 | -0.968 |
| BXD06 | -0.916 | -1.495 |
| BXD07 | -0.985 | -1.077 |
| BXD08 | -0.698 | -0.781 |
| BXD09 | -0.947 | -1.87 |
| CAST | 0.911 | 0.174 |
| CCcont | -0.807 | -1.767 |
| DS01 | -0.2 | 0.399 |
| DS02 | 0.469 | 0.578 |
| DS04 | 1.179 | -0.409 |
| DS0c | 1.222 | 0.083 |
| GP01 | 0.336 | -0.456 |
| GP02 | -1.08 | -0.744 |
| GP0c | -0.844 | -0.677 |
| NOD | 1.744 | 0.574 |
| NZO | 0.458 | 0.126 |
| PWK | 0.212 | -0.057 |
| H37Rv_KO_CtpC | -0.166 | -1.77 |
| H37Rv_KO_CtpD | 0.267 | -0.581 |
| H37Rv_KO_Rv1272 | -0.509 | -1.089 |
| H37Rv_KO_SugABC | -0.833 | -1.719 |
| H37Rv_KO_MbtN | -0.753 | -0.848 |
| Trans05 | -0.864 | -0.088 |
| macrophage_unactivated | 0.246 | -0.653 |
| IL1 | 0.353 | -0.445 |
| Rapamycin | -1.12 | -0.546 |
| Tcell | -0.072 | -0.867 |
| GMCSF | 0.187 | -0.446 |
| IFNab | -0.393 | -1.155 |
| IFNg | -0.874 | -0.136 |
| IFNg_GMCSF1 | 0.76 | -0.079 |
| Rv1432_day32 | -1.688 | -0.16 |
| Rv1565c_day32 | 1.267 | 0.062 |
| secA2_input | 0.476 | 1.133 |
| delta_Rv3594 | -1.124 | -0.601 |
| delta_Rv3717 | -0.529 | -0.271 |
| delta_Rv3811 | -0.775 | -0.458 |
| delta_Rv0954 | 0.0 | 0.151 |
| PonA1 | -0.387 | -0.324 |
| EccD1_KO | -1.894 | -0.151 |
| EspI_KO | -0.739 | 0.271 |
| PE35_KO | -1.397 | -0.079 |
| PPE68_KO | -1.168 | -0.266 |
| glycerol2 | 0.921 | 0.534 |
| lignocerate | 1.406 | 0.498 |
| oleate | 0.417 | 0.303 |
| phosphatidylcholine | 1.224 | 0.709 |
| acetate | 0.931 | 0.156 |
| glucAc | 0.897 | 0.155 |
| Rv0950ko | -0.19 | -0.027 |
| Rv1096ko | -1.267 | -0.25 |
| Rv3684ko | -0.498 | -0.662 |
| delta_otsA_trehalose | 0.136 | 0.719 |