Top 10 genes with highest correlation to Rv0604/lpqO:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2879c/- | (cc=0.519) | info on Rv2879c/- |
| Rv1249c/- | (cc=0.4964) | info on Rv1249c/- |
| Rv1442/bisC | (cc=0.4954) | info on Rv1442/bisC |
| Rv3532/PPE61 | (cc=0.4866) | info on Rv3532/PPE61 |
| Rv0302/- | (cc=0.4756) | info on Rv0302/- |
| Rv2007c/fdxA | (cc=0.4718) | info on Rv2007c/fdxA |
| Rv2880c/- | (cc=0.4691) | info on Rv2880c/- |
| Rv0015c/pknA | (cc=0.4678) | info on Rv0015c/pknA |
| Rv0269c/- | (cc=0.4656) | info on Rv0269c/- |
| Rv0061c/- | (cc=0.4604) | info on Rv0061c/- |
Correlation of Rv0604/lpqO with Rv0302/-
Normalized LFCs for Rv0604/lpqO:
(description and provenance of datasets)
| Rv0604/lpqO | Rv0302/- | |
| Fe_supp_jason_reseq | 1.159 | -0.903 |
| low_pH_jason_reseq | -1.474 | -0.549 |
| NO_jason_reseq | -2.195 | -0.079 |
| B6_jason_reseq | 0.798 | -0.488 |
| MHCII_jason_reseq | 1.287 | 0.451 |
| Isoniazid02 | 0.038 | 0.287 |
| Rifampicin4 | 0.347 | -0.639 |
| Ethambutol3 | -0.17 | -0.382 |
| Meropenem3 | 0.048 | -0.007 |
| Vancomycin16 | 0.0 | 0.101 |
| Rv2680_day32 | -0.525 | -0.199 |
| H37Rv_KO_MarP | 0.116 | 0.288 |
| hypoxia_3wks | 0.53 | -0.431 |
| hypoxia_6wks | -0.507 | 0.257 |
| glycerol | 1.27 | 0.332 |
| cholesterol | 0.077 | 0.022 |
| AJ | 0.729 | 0.343 |
| Bibs02 | 1.249 | 0.513 |
| Bibs02c | 0.896 | 0.876 |
| BL6 | 0.144 | -0.038 |
| BL6a | 0.027 | 0.456 |
| BXD01 | 0.39 | -0.045 |
| BXD010 | -0.118 | -0.279 |
| BXD011 | -0.94 | 0.415 |
| BXD03 | -0.115 | 0.665 |
| BXD04 | -1.037 | -0.165 |
| BXD05 | 0.089 | -0.293 |
| BXD06 | -0.78 | 0.02 |
| BXD07 | -0.46 | 0.051 |
| BXD08 | 0.509 | -0.093 |
| BXD09 | -0.416 | -0.152 |
| CAST | -0.112 | -0.267 |
| CCcont | 0.098 | 0.414 |
| DS01 | 0.731 | 0.017 |
| DS02 | 0.684 | 0.722 |
| DS04 | 0.839 | 0.299 |
| DS0c | 0.404 | 0.677 |
| GP01 | 0.0 | -0.277 |
| GP02 | -0.262 | -1.403 |
| GP0c | -0.101 | -0.296 |
| NOD | -0.921 | -0.939 |
| NZO | 0.118 | -0.231 |
| PWK | -0.124 | -0.392 |
| H37Rv_KO_CtpC | -1.291 | -0.095 |
| H37Rv_KO_CtpD | -0.532 | 0.606 |
| H37Rv_KO_Rv1272 | -1.06 | 0.444 |
| H37Rv_KO_SugABC | -1.802 | -1.377 |
| H37Rv_KO_MbtN | -0.819 | -0.778 |
| Trans05 | 0.462 | 0.005 |
| macrophage_unactivated | 1.18 | -0.679 |
| IL1 | 0.027 | -0.377 |
| Rapamycin | -0.792 | -1.022 |
| Tcell | -0.274 | -0.179 |
| GMCSF | 0.14 | 0.063 |
| IFNab | -0.342 | -0.55 |
| IFNg | -1.085 | -0.16 |
| IFNg_GMCSF1 | 2.124 | -0.657 |
| Rv1432_day32 | 1.395 | 0.694 |
| Rv1565c_day32 | 1.058 | -0.114 |
| secA2_input | -0.221 | 0.495 |
| delta_Rv3594 | -0.857 | -1.358 |
| delta_Rv3717 | -1.05 | -1.286 |
| delta_Rv3811 | -1.689 | -1.93 |
| delta_Rv0954 | -0.724 | -0.933 |
| PonA1 | -2.328 | -1.113 |
| EccD1_KO | 0.506 | -0.217 |
| EspI_KO | -0.24 | 0.0 |
| PE35_KO | 0.175 | 0.184 |
| PPE68_KO | 0.637 | 0.256 |
| glycerol2 | 0.726 | 0.894 |
| lignocerate | 1.142 | 1.447 |
| oleate | 1.353 | -0.343 |
| phosphatidylcholine | 1.452 | 0.805 |
| acetate | 0.843 | 0.579 |
| glucAc | 0.631 | 0.801 |
| Rv0950ko | 0.799 | 0.706 |
| Rv1096ko | 0.124 | 0.187 |
| Rv3684ko | 0.665 | 0.069 |
| delta_otsA_trehalose | 1.318 | 0.148 |