Top 10 genes with highest correlation to Rv0490/senX3:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3536c/hsaE | (cc=0.5926) | info on Rv3536c/hsaE |
| Rv3534c/hsaF | (cc=0.5331) | info on Rv3534c/hsaF |
| Rv3550/echA20 | (cc=0.5089) | info on Rv3550/echA20 |
| Rv3883c/mycP1 | (cc=0.5087) | info on Rv3883c/mycP1 |
| Rv3870/eccCa1 | (cc=0.5062) | info on Rv3870/eccCa1 |
| Rv3559c/- | (cc=0.5042) | info on Rv3559c/- |
| Rv2788/sirR | (cc=0.4974) | info on Rv2788/sirR |
| Rv1237/sugB | (cc=0.4852) | info on Rv1237/sugB |
| Rv2813/- | (cc=0.4828) | info on Rv2813/- |
| Rv1489A/- | (cc=0.4816) | info on Rv1489A/- |
Correlation of Rv0490/senX3 with Rv3536c/hsaE
Normalized LFCs for Rv0490/senX3:
(description and provenance of datasets)
| Rv0490/senX3 | Rv3536c/hsaE | |
| Fe_supp_jason_reseq | -0.923 | -0.742 |
| low_pH_jason_reseq | 0.224 | -1.415 |
| NO_jason_reseq | 1.019 | 0.194 |
| B6_jason_reseq | -0.858 | -2.137 |
| MHCII_jason_reseq | -1.899 | -1.408 |
| Isoniazid02 | -1.796 | -1.716 |
| Rifampicin4 | 0.533 | -0.306 |
| Ethambutol3 | -1.418 | -1.346 |
| Meropenem3 | -1.813 | -0.452 |
| Vancomycin16 | -0.825 | -1.313 |
| Rv2680_day32 | -0.024 | -2.328 |
| H37Rv_KO_MarP | -0.172 | 0.442 |
| hypoxia_3wks | 0.427 | -0.722 |
| hypoxia_6wks | 0.484 | -0.221 |
| glycerol | -0.07 | 0.506 |
| cholesterol | 0.229 | -2.019 |
| AJ | -1.182 | -2.664 |
| Bibs02 | -0.34 | -0.412 |
| Bibs02c | -1.285 | -1.1 |
| BL6 | -0.307 | -1.091 |
| BL6a | -0.943 | -2.323 |
| BXD01 | -1.252 | -1.088 |
| BXD010 | -0.054 | -2.563 |
| BXD011 | -1.16 | -1.064 |
| BXD03 | -0.518 | -1.284 |
| BXD04 | -0.357 | -1.649 |
| BXD05 | -0.93 | -2.149 |
| BXD06 | -1.033 | -1.989 |
| BXD07 | -0.994 | -0.746 |
| BXD08 | -0.901 | -1.527 |
| BXD09 | -1.17 | -1.795 |
| CAST | -1.148 | -1.004 |
| CCcont | 0.531 | 0.183 |
| DS01 | 0.508 | -1.889 |
| DS02 | 0.917 | -0.446 |
| DS04 | -0.923 | -0.822 |
| DS0c | -0.3 | -0.203 |
| GP01 | -1.286 | -2.45 |
| GP02 | -1.104 | -1.931 |
| GP0c | -1.044 | -1.591 |
| NOD | 0.617 | -0.871 |
| NZO | -0.887 | 0.244 |
| PWK | -0.602 | -2.561 |
| H37Rv_KO_CtpC | -1.144 | -1.787 |
| H37Rv_KO_CtpD | -1.563 | 0.117 |
| H37Rv_KO_Rv1272 | -0.251 | -0.375 |
| H37Rv_KO_SugABC | -0.153 | 0.538 |
| H37Rv_KO_MbtN | -0.043 | -1.725 |
| Trans05 | 0.009 | -0.334 |
| macrophage_unactivated | 0.919 | 0.338 |
| IL1 | -0.208 | -1.183 |
| Rapamycin | 0.325 | -0.976 |
| Tcell | -0.652 | -1.235 |
| GMCSF | 0.483 | -1.109 |
| IFNab | 0.964 | -0.729 |
| IFNg | -0.355 | -0.219 |
| IFNg_GMCSF1 | -0.449 | -0.584 |
| Rv1432_day32 | 0.18 | -0.692 |
| Rv1565c_day32 | -0.839 | -2.958 |
| secA2_input | 0.332 | -0.031 |
| delta_Rv3594 | 0.646 | -0.711 |
| delta_Rv3717 | -0.566 | -0.123 |
| delta_Rv3811 | 0.0 | -0.378 |
| delta_Rv0954 | -0.382 | 0.937 |
| PonA1 | 0.736 | -0.367 |
| EccD1_KO | 0.99 | 1.98 |
| EspI_KO | 0.613 | 0.696 |
| PE35_KO | 0.878 | 1.348 |
| PPE68_KO | 0.896 | 0.534 |
| glycerol2 | 1.513 | 2.028 |
| lignocerate | 1.538 | 2.762 |
| oleate | 0.086 | -2.069 |
| phosphatidylcholine | 1.038 | 1.548 |
| acetate | 0.549 | 1.589 |
| glucAc | 2.007 | 1.937 |
| Rv0950ko | 0.226 | -0.582 |
| Rv1096ko | -0.199 | 0.697 |
| Rv3684ko | -0.442 | 0.838 |
| delta_otsA_trehalose | -0.287 | -1.134 |