Top 10 genes with highest correlation to Rv0460/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1770/- | (cc=0.4837) | info on Rv1770/- |
| Rv0358/- | (cc=0.4363) | info on Rv0358/- |
| Rv0912/- | (cc=0.4316) | info on Rv0912/- |
| Rv2829c/vapC22 | (cc=0.4269) | info on Rv2829c/vapC22 |
| Rv3886c/mycP2 | (cc=0.425) | info on Rv3886c/mycP2 |
| Rv2679/echA15 | (cc=0.4204) | info on Rv2679/echA15 |
| Rv3032A/- | (cc=0.405) | info on Rv3032A/- |
| Rv1219c/- | (cc=0.4014) | info on Rv1219c/- |
| Rv1664/pks9 | (cc=0.3981) | info on Rv1664/pks9 |
| Rv0077c/- | (cc=0.3975) | info on Rv0077c/- |
Correlation of Rv0460/- with Rv2829c/vapC22
Normalized LFCs for Rv0460/-:
(description and provenance of datasets)
| Rv0460/- | Rv2829c/vapC22 | |
| Fe_supp_jason_reseq | 0.136 | -0.339 |
| low_pH_jason_reseq | -0.765 | -0.888 |
| NO_jason_reseq | 1.425 | 1.147 |
| B6_jason_reseq | -0.772 | -0.342 |
| MHCII_jason_reseq | 0.379 | 0.257 |
| Isoniazid02 | 0.118 | -0.583 |
| Rifampicin4 | 0.856 | 0.785 |
| Ethambutol3 | 0.358 | -0.018 |
| Meropenem3 | 0.867 | 0.985 |
| Vancomycin16 | -1.011 | -0.117 |
| Rv2680_day32 | -0.121 | -0.826 |
| H37Rv_KO_MarP | 1.335 | 0.0 |
| hypoxia_3wks | 0.108 | -0.203 |
| hypoxia_6wks | 0.0 | 0.52 |
| glycerol | 1.062 | -0.515 |
| cholesterol | 0.321 | -0.723 |
| AJ | 2.649 | -0.447 |
| Bibs02 | 0.034 | -0.958 |
| Bibs02c | -1.399 | -1.096 |
| BL6 | 1.974 | -0.36 |
| BL6a | -0.326 | -0.805 |
| BXD01 | 0.248 | -0.501 |
| BXD010 | 2.069 | 0.23 |
| BXD011 | -0.564 | -1.071 |
| BXD03 | -0.522 | 0.631 |
| BXD04 | 0.33 | 1.228 |
| BXD05 | 1.098 | 0.02 |
| BXD06 | 0.19 | 0.543 |
| BXD07 | 0.448 | -0.108 |
| BXD08 | 0.315 | -0.075 |
| BXD09 | 0.568 | -1.004 |
| CAST | -0.649 | 0.123 |
| CCcont | 1.319 | -0.124 |
| DS01 | -0.091 | -0.943 |
| DS02 | 0.764 | -0.23 |
| DS04 | 0.93 | -0.862 |
| DS0c | -0.899 | -0.033 |
| GP01 | 3.028 | -0.351 |
| GP02 | 1.475 | -1.24 |
| GP0c | 0.785 | -1.712 |
| NOD | -1.422 | 0.044 |
| NZO | 0.442 | -0.156 |
| PWK | 0.374 | -0.526 |
| H37Rv_KO_CtpC | 0.946 | -2.228 |
| H37Rv_KO_CtpD | 2.548 | 0.336 |
| H37Rv_KO_Rv1272 | 0.758 | -1.08 |
| H37Rv_KO_SugABC | -0.949 | -2.235 |
| H37Rv_KO_MbtN | 0.975 | -0.396 |
| Trans05 | -1.381 | -1.222 |
| macrophage_unactivated | 0.514 | 0.0 |
| IL1 | 0.706 | 1.444 |
| Rapamycin | 1.774 | 2.114 |
| Tcell | 1.173 | 1.193 |
| GMCSF | 1.288 | 1.048 |
| IFNab | 2.001 | 1.666 |
| IFNg | 1.804 | 0.46 |
| IFNg_GMCSF1 | 1.769 | 1.345 |
| Rv1432_day32 | 0.201 | 0.0 |
| Rv1565c_day32 | 2.999 | 0.0 |
| secA2_input | 2.453 | 0.047 |
| delta_Rv3594 | -0.451 | -1.996 |
| delta_Rv3717 | -1.144 | -2.378 |
| delta_Rv3811 | -2.014 | -0.629 |
| delta_Rv0954 | -0.908 | -0.823 |
| PonA1 | -0.467 | -1.996 |
| EccD1_KO | -1.848 | -0.428 |
| EspI_KO | -0.493 | -1.089 |
| PE35_KO | -1.301 | -1.511 |
| PPE68_KO | -0.992 | -1.222 |
| glycerol2 | 0.724 | 0.992 |
| lignocerate | -0.023 | 0.737 |
| oleate | -0.109 | 1.313 |
| phosphatidylcholine | 0.14 | 0.751 |
| acetate | 0.166 | 0.178 |
| glucAc | 0.429 | -0.45 |
| Rv0950ko | 1.52 | -1.269 |
| Rv1096ko | 0.449 | 1.532 |
| Rv3684ko | 2.558 | 1.019 |
| delta_otsA_trehalose | 3.444 | 1.788 |