Top 10 genes with highest correlation to Rv0379/secE2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1323/fadA4 | (cc=0.7072) | info on Rv1323/fadA4 |
| Rv3354/- | (cc=0.6778) | info on Rv3354/- |
| Rv2426c/- | (cc=0.6626) | info on Rv2426c/- |
| Rv2007c/fdxA | (cc=0.6618) | info on Rv2007c/fdxA |
| Rv2405/- | (cc=0.6418) | info on Rv2405/- |
| Rv0396/- | (cc=0.6391) | info on Rv0396/- |
| Rv3196/- | (cc=0.6375) | info on Rv3196/- |
| Rv2872/vapC43 | (cc=0.6353) | info on Rv2872/vapC43 |
| Rv0887c/- | (cc=0.6239) | info on Rv0887c/- |
| Rv2499c/- | (cc=0.6141) | info on Rv2499c/- |
Correlation of Rv0379/secE2 with Rv0887c/-
Normalized LFCs for Rv0379/secE2:
(description and provenance of datasets)
| Rv0379/secE2 | Rv0887c/- | |
| Fe_supp_jason_reseq | -0.707 | 0.415 |
| low_pH_jason_reseq | -0.32 | -0.599 |
| NO_jason_reseq | 1.197 | 2.392 |
| B6_jason_reseq | -0.727 | 2.335 |
| MHCII_jason_reseq | -0.542 | 2.223 |
| Isoniazid02 | 0.799 | 0.304 |
| Rifampicin4 | 0.046 | 0.051 |
| Ethambutol3 | 1.3 | -0.381 |
| Meropenem3 | 0.272 | 0.781 |
| Vancomycin16 | 0.44 | 1.666 |
| Rv2680_day32 | -0.692 | -0.413 |
| H37Rv_KO_MarP | -0.339 | 0.0 |
| hypoxia_3wks | -1.703 | -1.475 |
| hypoxia_6wks | 0.597 | -0.382 |
| glycerol | 1.29 | 0.541 |
| cholesterol | 0.307 | 0.71 |
| AJ | 0.178 | 0.138 |
| Bibs02 | 0.943 | 0.0 |
| Bibs02c | 0.562 | 1.035 |
| BL6 | -0.753 | -0.935 |
| BL6a | -0.694 | 0.36 |
| BXD01 | -3.242 | -0.542 |
| BXD010 | -1.486 | -2.717 |
| BXD011 | -2.338 | -1.316 |
| BXD03 | -3.193 | -2.012 |
| BXD04 | -2.154 | -0.048 |
| BXD05 | -2.001 | -0.545 |
| BXD06 | -1.712 | -1.152 |
| BXD07 | -3.111 | -1.677 |
| BXD08 | -2.542 | -1.219 |
| BXD09 | -2.019 | -1.702 |
| CAST | -0.552 | 0.185 |
| CCcont | -1.958 | 0.183 |
| DS01 | 0.289 | 0.577 |
| DS02 | 0.159 | 1.712 |
| DS04 | 0.048 | 0.087 |
| DS0c | -0.13 | 1.684 |
| GP01 | -2.055 | -1.0 |
| GP02 | -2.334 | -1.673 |
| GP0c | -2.237 | -0.714 |
| NOD | -0.937 | -0.412 |
| NZO | -0.759 | -0.785 |
| PWK | 0.681 | 0.24 |
| H37Rv_KO_CtpC | -0.505 | 0.061 |
| H37Rv_KO_CtpD | -0.49 | -1.885 |
| H37Rv_KO_Rv1272 | 0.006 | -0.464 |
| H37Rv_KO_SugABC | -2.379 | 0.306 |
| H37Rv_KO_MbtN | -1.646 | -1.749 |
| Trans05 | -0.513 | -3.216 |
| macrophage_unactivated | 0.035 | -1.098 |
| IL1 | -0.392 | -0.572 |
| Rapamycin | -0.365 | -3.397 |
| Tcell | -1.039 | 0.401 |
| GMCSF | -2.521 | -0.668 |
| IFNab | -1.466 | -1.466 |
| IFNg | -1.048 | -2.673 |
| IFNg_GMCSF1 | 2.118 | -1.304 |
| Rv1432_day32 | 0.18 | 0.0 |
| Rv1565c_day32 | -0.085 | -0.398 |
| secA2_input | -1.49 | -1.461 |
| delta_Rv3594 | 0.078 | 1.337 |
| delta_Rv3717 | -1.111 | 1.495 |
| delta_Rv3811 | 0.843 | 3.062 |
| delta_Rv0954 | 1.454 | 2.013 |
| PonA1 | 0.87 | 2.604 |
| EccD1_KO | -0.02 | -0.895 |
| EspI_KO | 0.319 | -0.776 |
| PE35_KO | 0.055 | 0.831 |
| PPE68_KO | 0.32 | -0.374 |
| glycerol2 | 1.188 | 2.844 |
| lignocerate | 2.25 | 3.288 |
| oleate | 0.0 | -0.179 |
| phosphatidylcholine | 1.401 | 2.962 |
| acetate | 3.712 | 3.586 |
| glucAc | 3.12 | 2.946 |
| Rv0950ko | 3.347 | 1.251 |
| Rv1096ko | 2.925 | 1.921 |
| Rv3684ko | 2.689 | 1.294 |
| delta_otsA_trehalose | -1.235 | -1.092 |