Top 10 genes with highest correlation to Rv0378/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1542c/glbN | (cc=0.5707) | info on Rv1542c/glbN |
| Rv2532c/- | (cc=0.5433) | info on Rv2532c/- |
| Rv0964c/- | (cc=0.5417) | info on Rv0964c/- |
| Rv0747/PE_PGRS10 | (cc=0.5412) | info on Rv0747/PE_PGRS10 |
| Rv0302/- | (cc=0.5289) | info on Rv0302/- |
| Rv2644c/- | (cc=0.5177) | info on Rv2644c/- |
| Rv2195/qcrA | (cc=0.5077) | info on Rv2195/qcrA |
| Rv2237A/- | (cc=0.5025) | info on Rv2237A/- |
| Rv1270c/lprA | (cc=0.4972) | info on Rv1270c/lprA |
| Rv3605c/- | (cc=0.4924) | info on Rv3605c/- |
Correlation of Rv0378/- with Rv0747/PE_PGRS10
Normalized LFCs for Rv0378/-:
(description and provenance of datasets)
| Rv0378/- | Rv0747/PE_PGRS10 | |
| Fe_supp_jason_reseq | -0.905 | -0.48 |
| low_pH_jason_reseq | 0.348 | 0.709 |
| NO_jason_reseq | 0.129 | -0.247 |
| B6_jason_reseq | 2.647 | 0.173 |
| MHCII_jason_reseq | 0.024 | 0.941 |
| Isoniazid02 | 0.691 | 0.064 |
| Rifampicin4 | 0.831 | 0.233 |
| Ethambutol3 | 0.249 | 0.37 |
| Meropenem3 | -1.058 | 2.002 |
| Vancomycin16 | 0.31 | -0.456 |
| Rv2680_day32 | -1.357 | -0.171 |
| H37Rv_KO_MarP | 1.101 | 0.027 |
| hypoxia_3wks | -0.379 | 0.243 |
| hypoxia_6wks | -0.301 | 0.127 |
| glycerol | -0.124 | 1.924 |
| cholesterol | -0.115 | 1.091 |
| AJ | 0.529 | 1.866 |
| Bibs02 | 1.779 | 0.993 |
| Bibs02c | 0.94 | 1.223 |
| BL6 | -1.203 | -1.133 |
| BL6a | -0.514 | 0.092 |
| BXD01 | -1.876 | -0.476 |
| BXD010 | -0.854 | -0.958 |
| BXD011 | -0.659 | -0.651 |
| BXD03 | -0.211 | -0.495 |
| BXD04 | -0.64 | 0.014 |
| BXD05 | -1.511 | -0.687 |
| BXD06 | -2.016 | -0.845 |
| BXD07 | -1.113 | -0.629 |
| BXD08 | -0.194 | -0.556 |
| BXD09 | -1.03 | -0.587 |
| CAST | 1.865 | 0.786 |
| CCcont | -0.436 | -0.733 |
| DS01 | 0.32 | 0.188 |
| DS02 | 0.682 | 0.569 |
| DS04 | -2.228 | 0.134 |
| DS0c | 0.357 | 0.335 |
| GP01 | -2.491 | -0.814 |
| GP02 | -1.458 | 0.17 |
| GP0c | -1.223 | -0.498 |
| NOD | 0.075 | 0.415 |
| NZO | 0.637 | 0.503 |
| PWK | 0.526 | 0.863 |
| H37Rv_KO_CtpC | 0.488 | -0.079 |
| H37Rv_KO_CtpD | -0.261 | -0.341 |
| H37Rv_KO_Rv1272 | -3.431 | -0.446 |
| H37Rv_KO_SugABC | -2.499 | 0.338 |
| H37Rv_KO_MbtN | 1.48 | 0.921 |
| Trans05 | -3.297 | -0.434 |
| macrophage_unactivated | -0.524 | -0.518 |
| IL1 | -1.569 | -0.561 |
| Rapamycin | -2.612 | -1.531 |
| Tcell | -0.593 | -0.701 |
| GMCSF | 1.188 | 0.694 |
| IFNab | -1.599 | -1.605 |
| IFNg | -0.278 | -1.334 |
| IFNg_GMCSF1 | -0.946 | 0.069 |
| Rv1432_day32 | 0.0 | 0.222 |
| Rv1565c_day32 | -1.579 | -1.524 |
| secA2_input | 1.711 | 0.205 |
| delta_Rv3594 | -2.743 | -0.567 |
| delta_Rv3717 | -2.078 | -0.657 |
| delta_Rv3811 | -6.0 | -0.564 |
| delta_Rv0954 | -2.875 | -1.978 |
| PonA1 | -2.688 | -0.891 |
| EccD1_KO | 0.095 | 0.763 |
| EspI_KO | 1.035 | -0.117 |
| PE35_KO | 0.636 | 0.088 |
| PPE68_KO | 0.534 | 0.096 |
| glycerol2 | 0.68 | 0.464 |
| lignocerate | 1.808 | 0.615 |
| oleate | 0.0 | 0.469 |
| phosphatidylcholine | 0.819 | 0.564 |
| acetate | 3.139 | 0.785 |
| glucAc | 2.721 | 0.8 |
| Rv0950ko | -0.54 | 0.684 |
| Rv1096ko | -0.971 | 0.838 |
| Rv3684ko | -2.414 | 0.164 |
| delta_otsA_trehalose | 0.468 | 1.365 |