Top 10 genes with highest correlation to Rv0308/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0988/- | (cc=0.4311) | info on Rv0988/- |
| Rv0987/- | (cc=0.4191) | info on Rv0987/- |
| Rv2951c/- | (cc=0.3898) | info on Rv2951c/- |
| Rv1895/- | (cc=0.3715) | info on Rv1895/- |
| Rv3110/moaB1 | (cc=0.3621) | info on Rv3110/moaB1 |
| Rv1498c/- | (cc=0.3588) | info on Rv1498c/- |
| Rv2253/- | (cc=0.3514) | info on Rv2253/- |
| Rv0713/- | (cc=0.3479) | info on Rv0713/- |
| Rv2928/tesA | (cc=0.3477) | info on Rv2928/tesA |
| Rv1575/- | (cc=0.3476) | info on Rv1575/- |
Correlation of Rv0308/- with Rv0988/-
Normalized LFCs for Rv0308/-:
(description and provenance of datasets)
| Rv0308/- | Rv0988/- | |
| Fe_supp_jason_reseq | 1.749 | 0.633 |
| low_pH_jason_reseq | 1.216 | -0.308 |
| NO_jason_reseq | -1.15 | -0.845 |
| B6_jason_reseq | -0.737 | -0.929 |
| MHCII_jason_reseq | -0.731 | -1.035 |
| Isoniazid02 | -0.735 | 0.851 |
| Rifampicin4 | -0.52 | -0.271 |
| Ethambutol3 | -1.398 | 0.966 |
| Meropenem3 | -0.121 | -0.247 |
| Vancomycin16 | -0.554 | -0.13 |
| Rv2680_day32 | 0.2 | -0.323 |
| H37Rv_KO_MarP | 0.573 | -0.127 |
| hypoxia_3wks | 0.112 | -0.327 |
| hypoxia_6wks | -0.079 | -0.355 |
| glycerol | -1.279 | 0.102 |
| cholesterol | -0.66 | 0.073 |
| AJ | 0.734 | -0.393 |
| Bibs02 | 1.174 | -0.098 |
| Bibs02c | -0.953 | -0.488 |
| BL6 | -0.92 | -0.138 |
| BL6a | -0.494 | 0.0 |
| BXD01 | 0.392 | -0.392 |
| BXD010 | -0.056 | -0.217 |
| BXD011 | -0.083 | -0.068 |
| BXD03 | -0.301 | 0.198 |
| BXD04 | 0.668 | 0.124 |
| BXD05 | 0.575 | 0.314 |
| BXD06 | -0.315 | 0.0 |
| BXD07 | 0.126 | 0.264 |
| BXD08 | -0.367 | 0.195 |
| BXD09 | 0.283 | 0.386 |
| CAST | -0.339 | 0.23 |
| CCcont | 0.363 | 0.58 |
| DS01 | -0.855 | 0.0 |
| DS02 | -0.429 | 0.318 |
| DS04 | 0.25 | -0.453 |
| DS0c | -0.118 | 0.993 |
| GP01 | -0.182 | -0.167 |
| GP02 | -1.098 | -0.52 |
| GP0c | -0.342 | -0.585 |
| NOD | 1.227 | 1.175 |
| NZO | -0.694 | 0.199 |
| PWK | -0.959 | 0.287 |
| H37Rv_KO_CtpC | 0.637 | 0.95 |
| H37Rv_KO_CtpD | -0.027 | -0.676 |
| H37Rv_KO_Rv1272 | -0.351 | -0.155 |
| H37Rv_KO_SugABC | 1.537 | 2.325 |
| H37Rv_KO_MbtN | 0.381 | -0.24 |
| Trans05 | 1.175 | 0.683 |
| macrophage_unactivated | 0.89 | 1.146 |
| IL1 | -0.35 | -0.483 |
| Rapamycin | 0.414 | -0.16 |
| Tcell | 0.313 | 0.326 |
| GMCSF | 0.288 | -0.43 |
| IFNab | 0.562 | 0.302 |
| IFNg | -2.598 | -0.593 |
| IFNg_GMCSF1 | -1.216 | -0.512 |
| Rv1432_day32 | 0.055 | 0.047 |
| Rv1565c_day32 | 1.845 | -0.074 |
| secA2_input | -0.121 | 0.277 |
| delta_Rv3594 | -0.312 | -0.867 |
| delta_Rv3717 | -0.984 | -1.553 |
| delta_Rv3811 | -0.821 | -1.835 |
| delta_Rv0954 | -0.297 | -1.292 |
| PonA1 | 0.229 | -0.851 |
| EccD1_KO | -0.424 | -0.352 |
| EspI_KO | 0.023 | 0.145 |
| PE35_KO | 0.3 | 0.0 |
| PPE68_KO | -0.08 | -0.166 |
| glycerol2 | 0.462 | 0.248 |
| lignocerate | -0.1 | -0.336 |
| oleate | 0.498 | 0.328 |
| phosphatidylcholine | 0.41 | 0.0 |
| acetate | -0.653 | 0.0 |
| glucAc | -0.371 | 0.0 |
| Rv0950ko | -0.561 | -0.546 |
| Rv1096ko | -0.347 | -1.004 |
| Rv3684ko | -0.851 | -1.267 |
| delta_otsA_trehalose | 0.0 | 0.4 |