TnSeqCorr

Top 10 genes with highest correlation to Rv0258c/-:

update plotcorrelationlink to info on gene
Rv2238c/ahpE (cc=0.5844) info on Rv2238c/ahpE
Rv1736c/narX (cc=0.5499) info on Rv1736c/narX
Rv3226c/- (cc=0.5259) info on Rv3226c/-
Rv0080/- (cc=0.5117) info on Rv0080/-
Rv3294c/- (cc=0.4912) info on Rv3294c/-
Rv2636/- (cc=0.4869) info on Rv2636/-
Rv2687c/- (cc=0.4866) info on Rv2687c/-
Rv1940/ribA1 (cc=0.4759) info on Rv1940/ribA1
Rv1843c/guaB1 (cc=0.4729) info on Rv1843c/guaB1
Rv1882c/- (cc=0.4701) info on Rv1882c/-

Correlation of Rv0258c/- with Rv3226c/-

Normalized LFCs for Rv0258c/-:
(description and provenance of datasets)
Rv0258c/-Rv3226c/-
Fe_supp_jason_reseq

-1.036

-0.98

low_pH_jason_reseq

-0.515

0.007

NO_jason_reseq

-1.189

-0.659

B6_jason_reseq

0.119

0.049

MHCII_jason_reseq

0.693

0.088

Isoniazid02

0.413

0.307

Rifampicin4

-0.173

0.866

Ethambutol3

-0.118

0.103

Meropenem3

0.212

0.581

Vancomycin16

1.016

0.615

Rv2680_day32

0.66

-0.076

H37Rv_KO_MarP

0.214

0.336

hypoxia_3wks

0.0

-0.112

hypoxia_6wks

-1.013

-0.322

glycerol

-0.664

0.171

cholesterol

0.362

0.663

AJ

-0.286

0.208

Bibs02

-0.26

-0.156

Bibs02c

0.0

-0.241

BL6

-2.406

-0.683

BL6a

-0.281

-0.456

BXD01

-2.047

-1.304

BXD010

-2.336

-0.206

BXD011

-2.002

-1.369

BXD03

-2.601

-0.491

BXD04

-2.256

-1.268

BXD05

-2.116

-0.062

BXD06

-1.912

-0.806

BXD07

-1.174

-0.77

BXD08

-2.091

-0.932

BXD09

-2.435

-0.935

CAST

0.452

0.44

CCcont

-2.872

-1.426

DS01

-0.57

0.457

DS02

0.811

0.996

DS04

-1.573

0.864

DS0c

0.782

1.325

GP01

0.109

0.232

GP02

-0.292

-1.083

GP0c

-1.862

-0.62

NOD

0.28

0.013

NZO

0.649

-0.163

PWK

0.095

0.537

H37Rv_KO_CtpC

0.447

0.281

H37Rv_KO_CtpD

-1.393

-1.073

H37Rv_KO_Rv1272

0.091

-0.536

H37Rv_KO_SugABC

-1.557

0.712

H37Rv_KO_MbtN

-1.039

-1.432

Trans05

-0.113

0.012

macrophage_unactivated

0.0

-1.657

IL1

-0.905

0.252

Rapamycin

0.402

-0.368

Tcell

-0.994

-0.319

GMCSF

-1.827

-0.436

IFNab

0.203

-0.296

IFNg

-1.849

0.97

IFNg_GMCSF1

2.69

1.04

Rv1432_day32

0.0

-1.484

Rv1565c_day32

-0.218

-0.33

secA2_input

-2.055

-0.457

delta_Rv3594

-0.332

0.587

delta_Rv3717

-0.427

0.221

delta_Rv3811

-0.845

0.315

delta_Rv0954

-0.044

-0.225

PonA1

-2.125

-0.474

EccD1_KO

-1.519

0.086

EspI_KO

-0.291

0.442

PE35_KO

-1.765

0.114

PPE68_KO

-1.062

-0.147

glycerol2

-0.531

0.552

lignocerate

-0.293

0.887

oleate

-0.537

-0.549

phosphatidylcholine

-0.531

0.49

acetate

0.178

0.6

glucAc

-0.392

0.634

Rv0950ko

-1.004

-0.621

Rv1096ko

-0.92

-0.256

Rv3684ko

-2.266

-0.491

delta_otsA_trehalose

1.22

2.308