TnSeqCorr

Top 10 genes with highest correlation to Rv0238/-:

update plotcorrelationlink to info on gene
Rv2131c/cysQ (cc=0.7516) info on Rv2131c/cysQ
Rv1339/- (cc=0.6938) info on Rv1339/-
Rv1780/- (cc=0.6695) info on Rv1780/-
Rv0211/pckA (cc=0.6603) info on Rv0211/pckA
Rv1078/pra (cc=0.6601) info on Rv1078/pra
Rv1080c/greA (cc=0.6578) info on Rv1080c/greA
Rv0642c/mmaA4 (cc=0.6272) info on Rv0642c/mmaA4
Rv1543/- (cc=0.602) info on Rv1543/-
Rv0502/- (cc=0.5871) info on Rv0502/-
Rv2785c/rpsO (cc=0.5816) info on Rv2785c/rpsO

Correlation of Rv0238/- with Rv2131c/cysQ

Normalized LFCs for Rv0238/-:
(description and provenance of datasets)
Rv0238/-Rv2131c/cysQ
Fe_supp_jason_reseq

-0.583

-1.579

low_pH_jason_reseq

-1.919

2.441

NO_jason_reseq

-2.058

-2.042

B6_jason_reseq

-1.519

-1.402

MHCII_jason_reseq

-1.595

-0.977

Isoniazid02

-0.796

4.744

Rifampicin4

-0.211

0.29

Ethambutol3

1.17

0.777

Meropenem3

1.411

-0.497

Vancomycin16

0.562

-1.303

Rv2680_day32

0.131

0.0

H37Rv_KO_MarP

1.25

1.3

hypoxia_3wks

2.125

1.184

hypoxia_6wks

1.831

2.414

glycerol

1.549

0.0

cholesterol

1.17

0.0

AJ

-0.442

0.0

Bibs02

-0.348

0.0

Bibs02c

-0.191

0.0

BL6

-0.238

2.634

BL6a

0.595

2.709

BXD01

0.0

3.093

BXD010

1.769

2.525

BXD011

2.186

2.032

BXD03

0.0

0.75

BXD04

0.594

1.582

BXD05

1.827

2.051

BXD06

0.401

2.793

BXD07

0.115

3.258

BXD08

0.111

1.781

BXD09

2.036

3.789

CAST

-0.21

0.0

CCcont

3.213

4.141

DS01

-0.45

0.0

DS02

-0.414

0.0

DS04

1.989

2.358

DS0c

-0.413

0.0

GP01

-0.188

0.0

GP02

-0.159

0.159

GP0c

-0.248

0.0

NOD

0.0

0.0

NZO

-0.38

0.0

PWK

-0.374

0.0

H37Rv_KO_CtpC

0.0

0.901

H37Rv_KO_CtpD

-0.116

0.241

H37Rv_KO_Rv1272

-0.129

1.714

H37Rv_KO_SugABC

1.165

2.572

H37Rv_KO_MbtN

3.167

1.712

Trans05

0.305

1.251

macrophage_unactivated

-1.016

-1.146

IL1

-0.955

-2.515

Rapamycin

0.068

-1.439

Tcell

-1.235

-3.812

GMCSF

-3.958

-1.545

IFNab

0.738

2.576

IFNg

-3.247

-2.673

IFNg_GMCSF1

-4.71

-1.838

Rv1432_day32

0.18

0.0

Rv1565c_day32

0.0

0.0

secA2_input

-1.565

0.523

delta_Rv3594

3.099

4.569

delta_Rv3717

3.619

3.925

delta_Rv3811

3.289

4.714

delta_Rv0954

-2.003

-0.69

PonA1

-2.35

-1.32

EccD1_KO

-6.0

-5.903

EspI_KO

-6.0

-6.0

PE35_KO

-3.856

-3.063

PPE68_KO

-3.663

-4.348

glycerol2

-3.747

-0.744

lignocerate

-1.501

-1.218

oleate

4.347

-1.955

phosphatidylcholine

-3.947

-1.931

acetate

-0.54

0.422

glucAc

-0.215

-0.249

Rv0950ko

-6.0

-5.992

Rv1096ko

-5.54

-6.0

Rv3684ko

-2.911

-6.0

delta_otsA_trehalose

1.902

-1.39