Top 10 genes with highest correlation to Rv0234c/gabD1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3062/ligB | (cc=0.5196) | info on Rv3062/ligB |
| Rv0347/- | (cc=0.513) | info on Rv0347/- |
| Rv0325/- | (cc=0.5037) | info on Rv0325/- |
| Rv1264/- | (cc=0.4834) | info on Rv1264/- |
| Rv3319/sdhB | (cc=0.4807) | info on Rv3319/sdhB |
| Rv1046c/- | (cc=0.4807) | info on Rv1046c/- |
| Rv3316/sdhC | (cc=0.4771) | info on Rv3316/sdhC |
| Rv1789/PPE26 | (cc=0.4736) | info on Rv1789/PPE26 |
| Rv0491/regX3 | (cc=0.4699) | info on Rv0491/regX3 |
| Rv3757c/proW | (cc=0.4615) | info on Rv3757c/proW |
Correlation of Rv0234c/gabD1 with Rv0347/-
Normalized LFCs for Rv0234c/gabD1:
(description and provenance of datasets)
| Rv0234c/gabD1 | Rv0347/- | |
| Fe_supp_jason_reseq | -1.929 | -0.63 |
| low_pH_jason_reseq | -0.768 | -1.29 |
| NO_jason_reseq | -0.307 | 0.129 |
| B6_jason_reseq | -0.153 | 1.434 |
| MHCII_jason_reseq | -0.306 | 0.048 |
| Isoniazid02 | 0.664 | 1.582 |
| Rifampicin4 | 0.0 | -0.165 |
| Ethambutol3 | 0.946 | 1.39 |
| Meropenem3 | -0.21 | -0.151 |
| Vancomycin16 | 0.414 | 0.589 |
| Rv2680_day32 | -0.725 | 0.0 |
| H37Rv_KO_MarP | -0.219 | 0.535 |
| hypoxia_3wks | 0.925 | -0.255 |
| hypoxia_6wks | 1.006 | 0.251 |
| glycerol | -0.029 | 1.191 |
| cholesterol | -0.043 | 0.568 |
| AJ | -0.034 | 0.212 |
| Bibs02 | -0.856 | 0.717 |
| Bibs02c | -1.707 | -0.359 |
| BL6 | -1.383 | 1.056 |
| BL6a | -1.616 | -1.036 |
| BXD01 | -0.944 | -0.751 |
| BXD010 | -1.265 | -0.67 |
| BXD011 | -0.923 | 0.0 |
| BXD03 | -1.553 | -1.115 |
| BXD04 | -0.173 | -0.713 |
| BXD05 | -0.863 | -0.776 |
| BXD06 | -0.427 | -0.043 |
| BXD07 | -0.648 | 0.383 |
| BXD08 | -1.363 | -0.696 |
| BXD09 | -0.658 | -0.735 |
| CAST | 0.162 | -0.15 |
| CCcont | -0.066 | -0.372 |
| DS01 | -0.178 | -0.236 |
| DS02 | -0.199 | 1.282 |
| DS04 | -0.51 | -0.062 |
| DS0c | -0.233 | -0.456 |
| GP01 | -1.489 | -0.031 |
| GP02 | -0.761 | -0.527 |
| GP0c | -0.942 | -0.551 |
| NOD | -0.903 | -1.061 |
| NZO | 0.6 | 0.737 |
| PWK | -0.148 | -0.264 |
| H37Rv_KO_CtpC | -0.148 | -1.456 |
| H37Rv_KO_CtpD | -0.993 | -1.454 |
| H37Rv_KO_Rv1272 | -0.795 | -1.759 |
| H37Rv_KO_SugABC | -1.696 | -1.137 |
| H37Rv_KO_MbtN | -1.38 | -1.089 |
| Trans05 | 0.092 | -0.988 |
| macrophage_unactivated | 0.164 | -1.016 |
| IL1 | 0.077 | -0.611 |
| Rapamycin | -0.163 | -0.632 |
| Tcell | 0.485 | -0.16 |
| GMCSF | 0.0 | 0.364 |
| IFNab | 0.233 | 0.142 |
| IFNg | 0.27 | 0.0 |
| IFNg_GMCSF1 | 0.544 | 0.0 |
| Rv1432_day32 | -0.722 | 0.0 |
| Rv1565c_day32 | -0.269 | 1.579 |
| secA2_input | -0.108 | 0.606 |
| delta_Rv3594 | 0.173 | 0.788 |
| delta_Rv3717 | -1.222 | -0.438 |
| delta_Rv3811 | 0.0 | 0.287 |
| delta_Rv0954 | -0.159 | 0.0 |
| PonA1 | 0.28 | 0.323 |
| EccD1_KO | -0.155 | -0.145 |
| EspI_KO | -0.274 | -0.53 |
| PE35_KO | -0.429 | -1.003 |
| PPE68_KO | -0.387 | -1.469 |
| glycerol2 | 0.666 | -0.88 |
| lignocerate | -0.189 | -0.471 |
| oleate | 0.407 | -0.89 |
| phosphatidylcholine | -0.141 | -0.704 |
| acetate | -0.397 | -0.836 |
| glucAc | -0.507 | 0.0 |
| Rv0950ko | -0.262 | 1.848 |
| Rv1096ko | 1.378 | 3.384 |
| Rv3684ko | 0.845 | 3.674 |
| delta_otsA_trehalose | 1.239 | 2.561 |